Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CFL1P4-201ENST00000451536 498 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 RPL5P16-201ENST00000471467 790 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AL117692.1-201ENST00000494283 713 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC091874.2-201ENST00000505889 720 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC093225.1-201ENST00000506867 1408 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 GAPDHP71-201ENST00000511530 1003 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 RN7SKP35-201ENST00000517210 151 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 IGKV3D-25-201ENST00000519599 235 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC091078.2-201ENST00000557145 559 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC090236.2-201ENST00000587933 1101 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AL353729.2-201ENST00000605859 1249 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AL359091.2-201ENST00000609303 556 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 MIR6809-201ENST00000612189 116 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC015712.7-201ENST00000615211 635 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC111152.1-202ENST00000635848 339 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 PPBPP2-201ENST00000513150 1362 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 AC140134.1-201ENST00000511830 3544 ntBASIC5.78□□□□□ -1.48
VPS39Q96JC1 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS39Q96JC1 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
VPS39Q96JC1 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.48
VPS39Q96JC1 SMG1P7-201ENST00000565246 2704 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 RNA5SP453-201ENST00000362503 119 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 RN7SKP171-201ENST00000364417 303 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 RNU1-136P-201ENST00000384181 164 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 BX276092.6-201ENST00000430476 250 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 NFYAP1-201ENST00000431953 972 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 EIF5AP4-201ENST00000441206 465 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 BX276092.8-201ENST00000455722 250 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC111000.6-201ENST00000514471 709 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC009879.1-201ENST00000520029 839 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 WBP1LP3-201ENST00000523033 208 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 OR1E3-201ENST00000575608 948 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 MIR4502-201ENST00000580432 81 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC092266.1-201ENST00000610958 165 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AL138820.1-201ENST00000617901 5305 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 AC016745.2-201ENST00000608834 3443 ntBASIC5.77□□□□□ -1.49
VPS39Q96JC1 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS39Q96JC1 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS39Q96JC1 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS39Q96JC1 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
VPS39Q96JC1 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms