Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC022022.1-201ENST00000430304 178 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 MTCO1P45-201ENST00000431457 267 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AP000936.3-201ENST00000438127 255 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 OR3D1P-201ENST00000438288 955 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 PPIAP10-201ENST00000438675 458 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 HIGD1AP16-201ENST00000450986 258 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC007386.1-201ENST00000455212 582 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC036111.2-201ENST00000533247 901 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 NPM1P42-201ENST00000560329 862 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AP005136.2-201ENST00000583253 1049 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AP001823.1-201ENST00000604056 1003 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC024255.1-201ENST00000614376 102 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC069234.4-201ENST00000621276 412 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 AC073488.6-201ENST00000632293 754 ntBASIC5.82□□□□□ -1.48
VMP1Q96GC9 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VMP1Q96GC9 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
VMP1Q96GC9 AOX3P-204ENST00000491025 2107 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 RNA5SP453-201ENST00000362503 119 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 RNU1-49P-201ENST00000363468 159 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 RNU6-618P-201ENST00000363518 112 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 GCNT1P4-201ENST00000404096 329 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL139039.2-201ENST00000407436 479 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL354707.3-201ENST00000427308 331 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 PSMD10P2-201ENST00000432890 672 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL590004.3-202ENST00000445883 451 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 RAD1P2-201ENST00000446414 663 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL157884.3-201ENST00000448273 1184 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC092967.1-201ENST00000449016 481 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 RPL7L1P3-201ENST00000455249 689 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 RPL37P23-201ENST00000492641 294 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 RNA5SP400-201ENST00000517155 111 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC087888.1-201ENST00000550884 1254 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC091167.5-201ENST00000605689 894 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AL080312.2-201ENST00000613001 630 ntBASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.81□□□□□ -1.48
VMP1Q96GC9 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 AC114876.1-201ENST00000490962 1366 ntBASIC5.8□□□□□ -1.48
VMP1Q96GC9 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VMP1Q96GC9 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.8□□□□□ -1.48
VMP1Q96GC9 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms