Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 RBMY1HP-201ENST00000382759 1389 ntBASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
CLIP4Q8N3C7 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC130304.1-201ENST00000622942 2385 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL034417.1-201ENST00000399343 800 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 NMD3P2-201ENST00000421815 761 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 GAPDHP59-201ENST00000435908 267 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 MTND2P40-201ENST00000436718 841 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 FTLP8-201ENST00000446770 267 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 OR52Y1P-201ENST00000452418 828 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 OSTCP1-201ENST00000455507 450 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RPS27P20-201ENST00000492051 246 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AP002453.1-201ENST00000492327 668 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 TPT1P8-201ENST00000510120 555 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RNA5SP441-201ENST00000516809 88 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 BTG1P1-201ENST00000540396 508 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC010503.3-201ENST00000594355 540 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 MIR6813-201ENST00000621638 56 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC073488.6-201ENST00000632293 754 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.51□□□□□ -1.53
CLIP4Q8N3C7 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AC114774.1-201ENST00000507410 1770 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 U3.10-201ENST00000364459 214 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 YWHAZP6-201ENST00000399764 738 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AL358178.1-201ENST00000407698 397 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 EEF1B2P8-201ENST00000414101 671 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AL512504.1-201ENST00000415494 778 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 FAM183DP-201ENST00000421987 399 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AC130360.1-201ENST00000425489 1117 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 AC108479.1-201ENST00000431142 427 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 RPL12P18-201ENST00000437175 325 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 PPIAP7-201ENST00000454070 489 ntBASIC5.5□□□□□ -1.53
CLIP4Q8N3C7 RPL31P53-201ENST00000457065 348 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms