Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AL133325.1-201ENST00000421090 382 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AL603882.1-201ENST00000463059 681 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 RN7SKP99-201ENST00000517028 307 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC114947.2-201ENST00000565748 2125 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 CASC19-221ENST00000641309 1382 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 RNA5SP305-201ENST00000362665 119 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC006466.1-201ENST00000438721 289 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC109462.1-201ENST00000491087 368 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 BRD9P1-201ENST00000529855 560 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 PCNPP1-201ENST00000552501 511 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 AC091905.4-201ENST00000623432 202 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 MFSD8-239ENST00000641590 2479 ntBASIC6.87□□□□□ -1.31
CCDC88AQ3V6T2 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ABCA11P-202ENST00000504019 2110 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 PANDAR-201ENST00000629595 1506 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AL033543.1-201ENST00000623440 13454 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 RNA5SP319-201ENST00000362768 119 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 NIFKP3-201ENST00000417799 865 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 RN7SL51P-201ENST00000468230 285 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 ZNF840P-201ENST00000504759 1996 ntBASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
CCDC88AQ3V6T2 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RN7SKP151-201ENST00000410230 316 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RPL7P45-201ENST00000455851 743 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC090114.3-201ENST00000479267 829 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 BLZF2P-201ENST00000553776 1130 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 AC105105.5-201ENST00000622635 1294 ntBASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
CCDC88AQ3V6T2 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms