Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC011455.2-201ENST00000599320 3336 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC027279.4-201ENST00000624371 2072 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AL445238.1-204ENST00000400311 463 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AL096711.1-201ENST00000404780 554 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 BX679664.2-201ENST00000439282 283 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC105420.1-201ENST00000504389 582 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 RNA5SP92-201ENST00000516437 110 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 IGHV4-55-201ENST00000520889 368 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC093524.1-201ENST00000564266 1094 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC090616.1-201ENST00000583895 447 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 RPL21P136-201ENST00000605378 396 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 TCL6_3.1-201ENST00000619064 137 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC105105.5-201ENST00000622635 1294 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AC073342.3-201ENST00000624211 193 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 OR8G3P-202ENST00000641572 1255 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 CCNT2P1-201ENST00000423082 1315 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AP002512.4-202ENST00000641599 4530 ntBASIC5.87□□□□□ -1.47
COL28A1Q2UY09 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL28A1Q2UY09 DNM1P47-203ENST00000571780 12667 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 MIR365B-201ENST00000362317 111 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RNU1-150P-201ENST00000362491 162 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SNORA56-201ENST00000383966 129 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 OR1F12-201ENST00000402365 945 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL133270.1-201ENST00000402635 279 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL132875.1-201ENST00000403623 949 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 TRIM60P17-201ENST00000415181 719 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RAB9AP4-201ENST00000415230 609 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RPL34P3-201ENST00000421454 338 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 FABP7P2-201ENST00000429946 379 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RPL12P3-201ENST00000440080 396 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL450996.1-201ENST00000445574 1202 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 HIGD1AP16-201ENST00000450986 258 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL606490.1-201ENST00000452266 765 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RPS26P24-201ENST00000497656 331 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC093763.2-201ENST00000505334 1223 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 BX510359.5-201ENST00000515651 304 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SEC11B-201ENST00000518383 499 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 IGKV1D-22-201ENST00000518953 324 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AP005119.1-201ENST00000580956 292 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms