Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC109446.4-201ENST00000623235 2755 ntBASIC5.35□□□□□ -1.55
LIM2P55344 SRRM1P3-201ENST00000426911 2678 ntBASIC5.35□□□□□ -1.55
LIM2P55344 PWAR1-201ENST00000624188 2414 ntBASIC5.35□□□□□ -1.55
LIM2P55344 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 RNF19BPY-201ENST00000458209 1550 ntBASIC5.34□□□□□ -1.55
LIM2P55344 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIM2P55344 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 RN7SKP185-201ENST00000362813 326 ntBASIC5.34□□□□□ -1.55
LIM2P55344 RNA5SP131-201ENST00000365452 119 ntBASIC5.34□□□□□ -1.55
LIM2P55344 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
LIM2P55344 AC096921.1-201ENST00000411661 375 ntBASIC5.34□□□□□ -1.55
LIM2P55344 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 RPL34P3-201ENST00000421454 338 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AC005297.1-201ENST00000444765 862 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 ABCA11P-202ENST00000504019 2110 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AC109481.1-201ENST00000509173 282 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 AC084824.2-201ENST00000548906 345 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 MIR4311-201ENST00000580794 100 ntBASIC5.34□□□□□ -1.55
LIM2P55344 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.34□□□□□ -1.55
LIM2P55344 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 RNA5SP439-201ENST00000617595 124 ntBASIC5.34□□□□□ -1.55
LIM2P55344 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.34□□□□□ -1.55
LIM2P55344 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
LIM2P55344 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIM2P55344 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.34□□□□□ -1.56
LIM2P55344 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIM2P55344 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIM2P55344 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIM2P55344 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.34□□□□□ -1.56
LIM2P55344 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 BRAFP1-201ENST00000445336 2703 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.33□□□□□ -1.56
LIM2P55344 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 RNA5SP326-201ENST00000363209 110 ntBASIC5.33□□□□□ -1.56
LIM2P55344 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
LIM2P55344 TRAV35-201ENST00000390462 330 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC005042.1-201ENST00000393397 800 ntBASIC5.33□□□□□ -1.56
LIM2P55344 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 RNF10P1-201ENST00000418589 369 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC113412.1-201ENST00000425840 504 ntBASIC5.33□□□□□ -1.56
LIM2P55344 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.33□□□□□ -1.56
LIM2P55344 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.33□□□□□ -1.56
LIM2P55344 TMEM183AP1-205ENST00000432739 290 ntBASIC5.33□□□□□ -1.56
LIM2P55344 MTND2P40-201ENST00000436718 841 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC064862.4-201ENST00000442180 334 ntBASIC5.33□□□□□ -1.56
LIM2P55344 RPL36AP39-201ENST00000445859 318 ntBASIC5.33□□□□□ -1.56
LIM2P55344 RPL31P15-201ENST00000449770 338 ntBASIC5.33□□□□□ -1.56
LIM2P55344 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
LIM2P55344 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.33□□□□□ -1.56
LIM2P55344 GLUD1P3-202ENST00000508551 200 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC097486.1-201ENST00000515331 210 ntBASIC5.33□□□□□ -1.56
LIM2P55344 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.33□□□□□ -1.56
LIM2P55344 AC135626.1-201ENST00000556983 435 ntBASIC5.33□□□□□ -1.56
LIM2P55344 MIR3614-201ENST00000581261 86 ntBASIC5.33□□□□□ -1.56
LIM2P55344 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.33□□□□□ -1.56
LIM2P55344 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.33□□□□□ -1.56
LIM2P55344 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.33□□□□□ -1.56
LIM2P55344 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIM2P55344 UGT2B24P-201ENST00000514441 1597 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms