Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC9.14□□□□□ -0.95
CUX1P39880 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
CUX1P39880 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
CUX1P39880 AL078621.3-201ENST00000623707 2042 ntBASIC9.14□□□□□ -0.95
CUX1P39880 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 AL353625.1-202ENST00000366273 571 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AL009179.1-201ENST00000406085 265 ntBASIC9.14□□□□□ -0.95
CUX1P39880 TMEM183AP1-205ENST00000432739 290 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AL365220.1-201ENST00000432923 399 ntBASIC9.14□□□□□ -0.95
CUX1P39880 RSU1P1-201ENST00000453416 441 ntBASIC9.14□□□□□ -0.95
CUX1P39880 MEMO1P4-201ENST00000453590 386 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AL672167.3-201ENST00000465951 960 ntBASIC9.14□□□□□ -0.95
CUX1P39880 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC9.14□□□□□ -0.95
CUX1P39880 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
CUX1P39880 EIF3KP3-201ENST00000514461 639 ntBASIC9.14□□□□□ -0.95
CUX1P39880 SCARNA16.4-201ENST00000516956 187 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC9.14□□□□□ -0.95
CUX1P39880 AC079075.1-201ENST00000559543 878 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AC234771.5-201ENST00000600161 514 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AC012557.1-201ENST00000607115 611 ntBASIC9.14□□□□□ -0.95
CUX1P39880 AL353662.3-201ENST00000625131 237 ntBASIC9.14□□□□□ -0.95
CUX1P39880 UBA3-213ENST00000631029 123 ntTSL 5 BASIC9.14□□□□□ -0.95
CUX1P39880 AC123769.2-201ENST00000624332 5984 ntBASIC9.14□□□□□ -0.95
CUX1P39880 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC9.14□□□□□ -0.95
CUX1P39880 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
CUX1P39880 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
CUX1P39880 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC9.13□□□□□ -0.95
CUX1P39880 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC9.13□□□□□ -0.95
CUX1P39880 AC022893.2-201ENST00000564832 3296 ntBASIC9.13□□□□□ -0.95
CUX1P39880 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
CUX1P39880 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC9.13□□□□□ -0.95
CUX1P39880 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC9.13□□□□□ -0.95
CUX1P39880 AC096921.1-201ENST00000411661 375 ntBASIC9.13□□□□□ -0.95
CUX1P39880 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC9.13□□□□□ -0.95
CUX1P39880 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC9.13□□□□□ -0.95
CUX1P39880 FTH1P2-201ENST00000466086 412 ntBASIC9.13□□□□□ -0.95
CUX1P39880 BNIP3P1-201ENST00000547295 580 ntBASIC9.13□□□□□ -0.95
CUX1P39880 AC008745.1-201ENST00000604064 271 ntBASIC9.13□□□□□ -0.95
CUX1P39880 AL683813.2-201ENST00000605245 502 ntBASIC9.13□□□□□ -0.95
CUX1P39880 AC105105.5-201ENST00000622635 1294 ntBASIC9.13□□□□□ -0.95
CUX1P39880 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC9.13□□□□□ -0.95
CUX1P39880 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC9.13□□□□□ -0.95
CUX1P39880 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC9.13□□□□□ -0.95
CUX1P39880 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC9.13□□□□□ -0.95
CUX1P39880 HSPD1P7-201ENST00000447985 1686 ntBASIC9.13□□□□□ -0.95
CUX1P39880 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
CUX1P39880 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 RAB28P1-201ENST00000411517 641 ntBASIC9.12□□□□□ -0.95
CUX1P39880 RPS17P17-201ENST00000419392 409 ntBASIC9.12□□□□□ -0.95
CUX1P39880 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 AC002075.1-201ENST00000457396 676 ntBASIC9.12□□□□□ -0.95
CUX1P39880 AC009127.1-201ENST00000467090 155 ntBASIC9.12□□□□□ -0.95
CUX1P39880 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC9.12□□□□□ -0.95
CUX1P39880 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC9.12□□□□□ -0.95
CUX1P39880 AF230666.2-201ENST00000602328 725 ntBASIC9.12□□□□□ -0.95
CUX1P39880 AC093799.2-201ENST00000610062 578 ntBASIC9.12□□□□□ -0.95
CUX1P39880 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC9.12□□□□□ -0.95
CUX1P39880 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC9.12□□□□□ -0.95
CUX1P39880 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
CUX1P39880 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC9.12□□□□□ -0.95
CUX1P39880 AC096741.1-201ENST00000472250 846 ntBASIC9.11□□□□□ -0.95
CUX1P39880 AC008897.1-201ENST00000494006 347 ntBASIC9.11□□□□□ -0.95
CUX1P39880 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC9.11□□□□□ -0.95
CUX1P39880 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC9.11□□□□□ -0.95
CUX1P39880 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC9.11□□□□□ -0.95
CUX1P39880 AC209154.1-201ENST00000582156 337 ntBASIC9.11□□□□□ -0.95
CUX1P39880 AC060766.1-201ENST00000590824 627 ntBASIC9.11□□□□□ -0.95
CUX1P39880 AL513327.3-201ENST00000602618 469 ntBASIC9.11□□□□□ -0.95
CUX1P39880 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC9.11□□□□□ -0.95
CUX1P39880 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC9.11□□□□□ -0.95
CUX1P39880 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC9.11□□□□□ -0.95
CUX1P39880 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
CUX1P39880 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC9.11□□□□□ -0.95
CUX1P39880 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
CUX1P39880 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 AL590139.1-201ENST00000416267 400 ntBASIC9.1□□□□□ -0.95
CUX1P39880 TEX41-205ENST00000431734 529 ntTSL 4 BASIC9.1□□□□□ -0.95
CUX1P39880 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC9.1□□□□□ -0.95
CUX1P39880 SLC25A51P1-201ENST00000468432 871 ntBASIC9.1□□□□□ -0.95
CUX1P39880 OR5AM1P-201ENST00000532136 1032 ntBASIC9.1□□□□□ -0.95
CUX1P39880 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC9.1□□□□□ -0.95
CUX1P39880 OR11H3P-201ENST00000554547 982 ntBASIC9.1□□□□□ -0.95
CUX1P39880 AC009117.1-201ENST00000563948 554 ntBASIC9.1□□□□□ -0.95
CUX1P39880 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC9.1□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms