Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.59□□□□□ -1.51
SHMT2P34897 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.59□□□□□ -1.52
SHMT2P34897 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.59□□□□□ -1.52
SHMT2P34897 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
SHMT2P34897 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SHMT2P34897 MFSD8-219ENST00000641228 2559 ntBASIC5.59□□□□□ -1.52
SHMT2P34897 AP000473.2-201ENST00000602659 1537 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SHMT2P34897 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 RPL11P3-201ENST00000395256 523 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 OR2AT2P-201ENST00000413438 905 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 SDHDP6-201ENST00000414693 480 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 METTL15P3-201ENST00000415522 1221 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 DPPA2P2-201ENST00000418220 897 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.58□□□□□ -1.52
SHMT2P34897 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 BX119321.1-201ENST00000428912 797 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.58□□□□□ -1.52
SHMT2P34897 HMGB3P24-201ENST00000433260 622 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.58□□□□□ -1.52
SHMT2P34897 RSU1P1-201ENST00000453416 441 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 MEMO1P4-201ENST00000453590 386 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 FRG2FP-204ENST00000453982 852 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 RPL12P39-201ENST00000455456 496 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.58□□□□□ -1.52
SHMT2P34897 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.58□□□□□ -1.52
SHMT2P34897 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 AC021678.3-201ENST00000517893 476 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AC139365.2-201ENST00000517972 253 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 HMGB1P42-201ENST00000532126 553 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.58□□□□□ -1.52
SHMT2P34897 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.58□□□□□ -1.52
SHMT2P34897 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 NANOGP3-201ENST00000605855 286 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 AC090607.5-201ENST00000615692 224 ntBASIC5.58□□□□□ -1.52
SHMT2P34897 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.58□□□□□ -1.52
SHMT2P34897 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SHMT2P34897 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SHMT2P34897 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SHMT2P34897 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHMT2P34897 AC004158.1-201ENST00000564508 4319 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AL078595.2-201ENST00000605309 1780 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
SHMT2P34897 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
SHMT2P34897 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.57□□□□□ -1.52
SHMT2P34897 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHMT2P34897 HMGB1P20-201ENST00000402555 677 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC093155.2-201ENST00000420734 937 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 CRIP1P1-201ENST00000427567 185 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC104843.2-201ENST00000427666 297 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.57□□□□□ -1.52
SHMT2P34897 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.57□□□□□ -1.52
SHMT2P34897 LRRC37A14P-201ENST00000452297 462 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 AC016724.1-201ENST00000453215 421 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 RPS23P2-201ENST00000463671 415 ntBASIC5.57□□□□□ -1.52
SHMT2P34897 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms