Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PSG10P-201ENST00000501199 1500 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC083837.1-201ENST00000565297 2994 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AL358178.1-201ENST00000407698 397 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC007568.1-201ENST00000422912 471 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 SETP10-201ENST00000424368 814 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 ZFAND6P1-201ENST00000434138 605 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 MTCO3P43-201ENST00000440974 771 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC108693.1-201ENST00000496068 432 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 CR383658.1-201ENST00000514609 734 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 RNU6-760P-201ENST00000516078 97 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 OOSP1P2-201ENST00000579644 351 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AP001823.1-201ENST00000604056 1003 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 MIR6793-201ENST00000612376 63 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 AC073575.2-201ENST00000614212 627 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 WDR95P-201ENST00000425638 1542 ntBASIC5.89□□□□□ -1.47
COL28A1Q2UY09 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL28A1Q2UY09 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 SNORA21-201ENST00000362423 132 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 RNA5SP350-201ENST00000363298 111 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 RN7SKP103-201ENST00000363848 320 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 NPM1P38-201ENST00000403835 865 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AL356806.1-201ENST00000422524 916 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 OR5W1P-201ENST00000423705 938 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 FMO7P-201ENST00000436045 768 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 RN7SL329P-201ENST00000467740 299 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC004815.1-201ENST00000484185 331 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 RNA5SP228-201ENST00000516232 133 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 COX6CP7-201ENST00000597056 208 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 FO393422.1-201ENST00000603908 708 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AL133445.2-201ENST00000611191 527 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 MIR6820-201ENST00000611508 62 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC096708.4-201ENST00000620563 552 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 MIR6810-201ENST00000622701 70 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 MIR193BHG-214ENST00000641765 509 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AL353743.3-201ENST00000442109 1468 ntBASIC5.88□□□□□ -1.47
COL28A1Q2UY09 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.88□□□□□ -1.47
COL28A1Q2UY09 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms