Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC005042.1-201ENST00000393397 800 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXF1Q12946 RPL34P3-201ENST00000421454 338 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC113412.1-201ENST00000425840 504 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC006335.2-201ENST00000437993 330 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC005297.1-201ENST00000444765 862 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC073072.2-201ENST00000447425 348 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 LRRC37A14P-201ENST00000452297 462 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC112191.2-201ENST00000522428 333 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC137627.1-201ENST00000545761 289 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXF1Q12946 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXF1Q12946 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXF1Q12946 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.11□□□□□ -1.59
FOXF1Q12946 AC000095.2-202ENST00000637415 154 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 RNF19BPY-201ENST00000458209 1550 ntBASIC5.11□□□□□ -1.59
FOXF1Q12946 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXF1Q12946 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 AL121886.1-201ENST00000358609 435 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 RNA5SP131-201ENST00000365452 119 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AC087752.1-201ENST00000391360 558 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AL031985.1-201ENST00000392713 418 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 RN7SKP17-201ENST00000411242 351 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 YES1P1-201ENST00000418510 1628 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.1□□□□□ -1.59
FOXF1Q12946 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC064862.4-201ENST00000442180 334 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 BRAFP1-201ENST00000445336 2703 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 HMGN1P36-201ENST00000446623 298 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 RPL31P15-201ENST00000449770 338 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 RN7SL72P-201ENST00000460697 269 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AC108751.3-201ENST00000461814 1020 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
FOXF1Q12946 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC114786.1-201ENST00000512892 1415 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 MIR4311-201ENST00000580794 100 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC025857.2-201ENST00000602711 238 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AC127024.6-201ENST00000621598 424 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AL161912.4-201ENST00000623889 2468 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 AC092451.3-201ENST00000625067 1343 ntBASIC5.1□□□□□ -1.59
FOXF1Q12946 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
FOXF1Q12946 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.1□□□□□ -1.59
FOXF1Q12946 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.1□□□□□ -1.59
FOXF1Q12946 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
FOXF1Q12946 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms