Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SETP3-201ENST00000581726 813 ntBASIC5.61□□□□□ -1.51
SHMT2P34897 AP005431.1-201ENST00000618479 319 ntBASIC5.61□□□□□ -1.51
SHMT2P34897 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SHMT2P34897 AL442128.2-201ENST00000620246 1824 ntBASIC5.61□□□□□ -1.51
SHMT2P34897 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHMT2P34897 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SHMT2P34897 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHMT2P34897 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SHMT2P34897 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.6□□□□□ -1.51
SHMT2P34897 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 AC004656.1-201ENST00000568479 4951 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC239868.2-201ENST00000564237 4527 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 OR13C1P-202ENST00000641378 2919 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SHMT2P34897 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 AL357752.1-201ENST00000412817 349 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC127526.2-201ENST00000426436 775 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 MTND6P12-201ENST00000428247 522 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.6□□□□□ -1.51
SHMT2P34897 AL389925.1-201ENST00000432257 728 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 OR7E116P-201ENST00000448529 957 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC004129.2-201ENST00000457229 287 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC012123.2-201ENST00000485809 248 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 SCARNA6.1-201ENST00000516989 238 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 CYCSP22-201ENST00000517555 339 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.6□□□□□ -1.51
SHMT2P34897 IGBP1P1-201ENST00000554337 1009 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.6□□□□□ -1.51
SHMT2P34897 AC015802.2-201ENST00000589690 189 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.6□□□□□ -1.51
SHMT2P34897 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.6□□□□□ -1.51
SHMT2P34897 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 AC022919.1-201ENST00000624979 626 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 AC087565.3-203ENST00000641018 837 ntBASIC5.6□□□□□ -1.51
SHMT2P34897 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.6□□□□□ -1.51
SHMT2P34897 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHMT2P34897 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.6□□□□□ -1.51
SHMT2P34897 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SHMT2P34897 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
SHMT2P34897 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SHMT2P34897 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 AL132656.3-201ENST00000606384 1595 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SHMT2P34897 RN7SKP78-201ENST00000364711 318 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 RN7SKP292-201ENST00000365522 317 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AL031985.1-201ENST00000392713 418 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.59□□□□□ -1.51
SHMT2P34897 AL158827.1-201ENST00000416300 391 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 RPL34P3-201ENST00000421454 338 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 VN1R21P-201ENST00000426703 765 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.59□□□□□ -1.51
SHMT2P34897 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.59□□□□□ -1.51
SHMT2P34897 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.59□□□□□ -1.51
SHMT2P34897 MED28P3-201ENST00000444288 531 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.59□□□□□ -1.51
SHMT2P34897 AC073072.2-201ENST00000447425 348 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 NXT1P1-201ENST00000458481 316 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 UBFD1P1-201ENST00000473259 814 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 RN7SL570P-201ENST00000484405 292 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 OR7E157P-201ENST00000494376 911 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 AC078899.1-201ENST00000521432 1185 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.59□□□□□ -1.51
SHMT2P34897 IGLV3-30-201ENST00000524362 298 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 OR8Q1P-201ENST00000526467 655 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC126615.2-201ENST00000553003 515 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.59□□□□□ -1.51
SHMT2P34897 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.59□□□□□ -1.51
SHMT2P34897 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.59□□□□□ -1.51
SHMT2P34897 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SHMT2P34897 AL357153.4-201ENST00000620487 1016 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 AC127024.6-201ENST00000621598 424 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SHMT2P34897 MIR193BHG-214ENST00000641765 509 ntBASIC5.59□□□□□ -1.51
SHMT2P34897 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms