Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.4□□□□□ -1.23
HOXC9P31274 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
HOXC9P31274 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC7.4□□□□□ -1.23
HOXC9P31274 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
HOXC9P31274 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC7.4□□□□□ -1.23
HOXC9P31274 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.4□□□□□ -1.23
HOXC9P31274 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC7.39□□□□□ -1.23
HOXC9P31274 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.39□□□□□ -1.23
HOXC9P31274 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
HOXC9P31274 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 DMD-222ENST00000474231 5209 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC7.39□□□□□ -1.23
HOXC9P31274 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC7.39□□□□□ -1.23
HOXC9P31274 RNA5SP326-201ENST00000363209 110 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 CDC123-202ENST00000378900 933 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC7.39□□□□□ -1.23
HOXC9P31274 AL133388.1-201ENST00000404509 287 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC7.39□□□□□ -1.23
HOXC9P31274 SRSF1P1-201ENST00000424058 520 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 USP24P1-201ENST00000433802 779 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC7.39□□□□□ -1.23
HOXC9P31274 RNU6-941P-201ENST00000516346 108 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.39□□□□□ -1.23
HOXC9P31274 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 AC106730.2-201ENST00000566641 540 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 HIRAP1-201ENST00000605318 787 ntBASIC7.39□□□□□ -1.23
HOXC9P31274 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.39□□□□□ -1.23
HOXC9P31274 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
HOXC9P31274 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.39□□□□□ -1.23
HOXC9P31274 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 AC009948.3-201ENST00000603415 1798 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
HOXC9P31274 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.38□□□□□ -1.23
HOXC9P31274 AC073410.1-201ENST00000435125 589 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC7.38□□□□□ -1.23
HOXC9P31274 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.38□□□□□ -1.23
HOXC9P31274 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.38□□□□□ -1.23
HOXC9P31274 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.38□□□□□ -1.23
HOXC9P31274 AC022832.1-201ENST00000530718 645 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 AL133481.2-203ENST00000607558 139 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 MAPK10-350ENST00000641777 965 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.38□□□□□ -1.23
HOXC9P31274 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
HOXC9P31274 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
HOXC9P31274 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.38□□□□□ -1.23
HOXC9P31274 AC011493.1-201ENST00000596753 1632 ntBASIC7.38□□□□□ -1.23
HOXC9P31274 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.37□□□□□ -1.23
HOXC9P31274 AL033543.1-201ENST00000623440 13454 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 RNA5SP514-201ENST00000363717 111 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 RNA5SP251-201ENST00000410614 137 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC096921.1-201ENST00000411661 375 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC068138.1-201ENST00000412635 217 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC7.37□□□□□ -1.23
HOXC9P31274 AL590762.4-201ENST00000425885 253 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC7.37□□□□□ -1.23
HOXC9P31274 BTG3P1-201ENST00000435859 716 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.37□□□□□ -1.23
HOXC9P31274 RPL12P39-201ENST00000455456 496 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 CSNK1A1P3-201ENST00000504105 330 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC147055.3-201ENST00000510547 851 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.37□□□□□ -1.23
HOXC9P31274 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC7.37□□□□□ -1.23
HOXC9P31274 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.37□□□□□ -1.23
HOXC9P31274 RN7SKP253-201ENST00000516424 309 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC087763.1-201ENST00000603391 286 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.37□□□□□ -1.23
HOXC9P31274 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.37□□□□□ -1.23
HOXC9P31274 AC119674.1-217ENST00000641942 1086 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.37□□□□□ -1.23
HOXC9P31274 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 MT-RNR2-201ENST00000387347 1559 ntBASIC7.37□□□□□ -1.23
HOXC9P31274 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
HOXC9P31274 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
HOXC9P31274 ZNF969P-201ENST00000510345 2341 ntBASIC7.36□□□□□ -1.23
HOXC9P31274 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
HOXC9P31274 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms