Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSH3P20585 AP004607.3-201ENST00000530354 3915 ntBASIC5.78□□□□□ -1.48
MSH3P20585 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
MSH3P20585 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSH3P20585 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSH3P20585 OR7E25P-201ENST00000344844 931 ntBASIC5.78□□□□□ -1.48
MSH3P20585 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.78□□□□□ -1.48
MSH3P20585 MIR1282-201ENST00000408865 101 ntBASIC5.78□□□□□ -1.48
MSH3P20585 BX323845.3-201ENST00000428215 527 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AC013410.1-201ENST00000436223 1232 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 AC007386.1-201ENST00000455212 582 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AC093166.4-201ENST00000457867 318 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 AC012123.2-201ENST00000485809 248 ntBASIC5.78□□□□□ -1.48
MSH3P20585 PDCL3P4-201ENST00000489621 720 ntBASIC5.78□□□□□ -1.48
MSH3P20585 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 ACTR6P1-201ENST00000514311 1104 ntBASIC5.78□□□□□ -1.48
MSH3P20585 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.78□□□□□ -1.48
MSH3P20585 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 AP000648.1-201ENST00000529682 397 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.78□□□□□ -1.48
MSH3P20585 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.78□□□□□ -1.48
MSH3P20585 AC091078.2-201ENST00000557145 559 ntBASIC5.78□□□□□ -1.48
MSH3P20585 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 ZNF322P1-201ENST00000568013 1209 ntBASIC5.78□□□□□ -1.48
MSH3P20585 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
MSH3P20585 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 AL031601.1-201ENST00000605702 394 ntBASIC5.78□□□□□ -1.48
MSH3P20585 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 AC129915.3-201ENST00000634128 948 ntBASIC5.78□□□□□ -1.48
MSH3P20585 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.78□□□□□ -1.48
MSH3P20585 OR8G3P-202ENST00000641572 1255 ntBASIC5.78□□□□□ -1.48
MSH3P20585 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
MSH3P20585 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 NEPNP-201ENST00000404786 1371 ntBASIC5.78□□□□□ -1.48
MSH3P20585 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.78□□□□□ -1.48
MSH3P20585 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.78□□□□□ -1.48
MSH3P20585 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.78□□□□□ -1.48
MSH3P20585 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSH3P20585 AC120036.2-201ENST00000509729 1474 ntBASIC5.77□□□□□ -1.49
MSH3P20585 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 FBXL21-201ENST00000297158 1305 ntBASIC5.77□□□□□ -1.49
MSH3P20585 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
MSH3P20585 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 RN7SKP29-201ENST00000410957 272 ntBASIC5.77□□□□□ -1.49
MSH3P20585 AL354868.1-201ENST00000417077 482 ntBASIC5.77□□□□□ -1.49
MSH3P20585 MRPS21P2-201ENST00000424704 264 ntBASIC5.77□□□□□ -1.49
MSH3P20585 CDY8P-201ENST00000428380 1279 ntBASIC5.77□□□□□ -1.49
MSH3P20585 AC012497.1-201ENST00000429392 575 ntBASIC5.77□□□□□ -1.49
MSH3P20585 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 AC096775.1-201ENST00000437724 448 ntBASIC5.77□□□□□ -1.49
MSH3P20585 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 CDY20P-201ENST00000447528 1279 ntBASIC5.77□□□□□ -1.49
MSH3P20585 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 AL157777.1-201ENST00000468100 304 ntBASIC5.77□□□□□ -1.49
MSH3P20585 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 MIR4260-201ENST00000583107 67 ntBASIC5.77□□□□□ -1.49
MSH3P20585 AC060780.2-201ENST00000589047 198 ntBASIC5.77□□□□□ -1.49
MSH3P20585 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC5.77□□□□□ -1.49
MSH3P20585 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 AP003400.2-201ENST00000624036 666 ntBASIC5.77□□□□□ -1.49
MSH3P20585 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.77□□□□□ -1.49
MSH3P20585 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.77□□□□□ -1.49
MSH3P20585 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSH3P20585 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms