Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VMP1Q96GC9 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VMP1Q96GC9 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
VMP1Q96GC9 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VMP1Q96GC9 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.86□□□□□ -1.47
VMP1Q96GC9 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
VMP1Q96GC9 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VMP1Q96GC9 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
VMP1Q96GC9 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.86□□□□□ -1.47
VMP1Q96GC9 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC004158.1-201ENST00000564508 4319 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 UGT2B26P-201ENST00000508672 1613 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 RNA5SP346-201ENST00000363541 121 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 VN1R12P-201ENST00000403778 876 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 NPM1P26-201ENST00000426339 738 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 RPSAP40-201ENST00000442343 891 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 MORF4-201ENST00000447135 971 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 HMGB1P7-201ENST00000450921 612 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL022319.1-201ENST00000458183 1167 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 RPL5P22-201ENST00000480199 884 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL035690.1-201ENST00000490892 383 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 RN7SL284P-201ENST00000498823 275 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 ATG10-AS1-201ENST00000504846 648 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 SNX18P24-201ENST00000505249 671 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 HMGN1P17-201ENST00000513734 295 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AP002373.2-201ENST00000541631 1060 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC026826.3-201ENST00000561747 158 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 GLYATL1P2-202ENST00000588046 902 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC020915.5-201ENST00000596836 964 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL391597.1-201ENST00000618707 694 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC073592.6-201ENST00000624271 415 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 TMEM30CP-203ENST00000637814 1035 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AC004656.1-201ENST00000568479 4951 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 AL137141.1-201ENST00000624622 4836 ntBASIC5.85□□□□□ -1.47
VMP1Q96GC9 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.85□□□□□ -1.47
VMP1Q96GC9 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VMP1Q96GC9 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
VMP1Q96GC9 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VMP1Q96GC9 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VMP1Q96GC9 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VMP1Q96GC9 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 TCP11X1-202ENST00000622971 1372 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 SNORD65-201ENST00000391079 73 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 RN7SKP121-201ENST00000410842 305 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 AL035422.1-201ENST00000414193 397 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 AL354766.1-201ENST00000423396 542 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 RPL23AP4-201ENST00000427757 463 ntBASIC5.84□□□□□ -1.47
VMP1Q96GC9 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.84□□□□□ -1.47
VMP1Q96GC9 NPM1P18-201ENST00000434232 732 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms