Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC026523.2-201ENST00000625039 7739 ntBASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC112Q8NEF3 HSPA8P14-201ENST00000552265 1805 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC117409.1-201ENST00000470499 1310 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 RPL11P4-201ENST00000332269 436 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 SNORA21-201ENST00000362423 132 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 RNA5SP77-201ENST00000365394 120 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 RNA5SP279-201ENST00000365513 117 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 U3.28-201ENST00000391249 210 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AL132875.1-201ENST00000403623 949 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AL139805.1-201ENST00000407837 289 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC096921.1-201ENST00000411661 375 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC079807.1-201ENST00000429993 481 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ARMC4P1-201ENST00000438905 707 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 GNL2P1-201ENST00000451274 2190 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC002553.3-201ENST00000453002 341 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC016724.1-201ENST00000453215 421 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AL358876.1-201ENST00000453364 1075 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 COX6B1P2-201ENST00000489624 230 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 HSD3BP3-201ENST00000514706 994 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 MIR4502-201ENST00000580432 81 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 MIR7853-201ENST00000584820 132 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 IGKV2OR2-1-201ENST00000605129 304 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AL603750.1-201ENST00000624216 1717 ntBASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC112Q8NEF3 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC083843.2-201ENST00000568248 6253 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 YWHAZP6-201ENST00000399764 738 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 SNRPEP6-201ENST00000407465 277 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC023141.8-201ENST00000442554 208 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 TCEA1P3-201ENST00000443005 880 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AL590004.3-202ENST00000445883 451 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 FTLP8-201ENST00000446770 267 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC023245.1-201ENST00000468501 517 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AP002884.1-201ENST00000479691 655 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 LSM3P2-201ENST00000551246 273 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC006363.1-201ENST00000603806 463 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC145423.1-201ENST00000605712 336 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AL135999.3-201ENST00000610501 812 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 MIR1910-201ENST00000636955 80 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC104964.3-201ENST00000606115 2860 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 AC006206.1-201ENST00000544842 3387 ntBASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC112Q8NEF3 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 OR4F13P-202ENST00000560066 2054 ntBASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 AC073136.1-201ENST00000449426 2884 ntBASIC6.27□□□□□ -1.41
CCDC112Q8NEF3 AL121886.1-201ENST00000358609 435 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms