Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PRR13-204ENST00000547368 688 ntAPPRIS ALT2 TSL 3 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 HMGN1P26-201ENST00000558737 303 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC106734.1-201ENST00000568646 663 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL031722.1-201ENST00000570247 220 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL355375.2-201ENST00000574825 175 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL592148.2-201ENST00000612210 372 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL138693.1-201ENST00000622219 129 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL139254.2-202ENST00000641937 1156 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL031123.2-201ENST00000563225 3325 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 RAI14-220ENST00000512629 2941 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 ZNF840P-201ENST00000504759 1996 ntBASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 GNG12-201ENST00000370982 4404 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 MEP1B-201ENST00000269202 2312 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
NPAS3Q8IXF0 AL353795.1-201ENST00000439134 1775 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 TXNRD1-219ENST00000529546 2018 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 TMPRSS11D-201ENST00000283916 2817 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 GLS2-215ENST00000539272 2174 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 MAP3K7CL-201ENST00000286791 1725 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 HSPD1P11-201ENST00000508643 1702 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RNU6-1309P-201ENST00000363305 108 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RNU1-122P-201ENST00000365538 156 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RNU6-1105P-201ENST00000384774 107 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 CALM2P3-201ENST00000400429 449 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 OR4K12P-201ENST00000406538 961 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 LSM5-205ENST00000409952 687 ntTSL 4 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RN7SKP207-201ENST00000411204 303 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RANP4-201ENST00000413361 655 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC009413.1-201ENST00000414823 399 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 MTCO1P20-201ENST00000425366 358 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RPL31P54-201ENST00000429803 370 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC013403.1-201ENST00000436954 263 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC010301.1-201ENST00000473936 355 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RPL12P7-201ENST00000493832 494 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 MYL6-211ENST00000548580 528 ntTSL 2 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC019322.1-201ENST00000571869 389 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 RN7SL426P-201ENST00000579106 295 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 MIR3149-201ENST00000584629 83 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 COX6CP16-201ENST00000603667 216 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC245407.2-201ENST00000614199 451 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC124319.3-201ENST00000616832 526 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC243756.2-201ENST00000618406 463 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC018816.2-201ENST00000621460 353 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC005355.2-201ENST00000625064 484 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 SNORA43.5-201ENST00000631270 138 ntBASIC7.76□□□□□ -1.17
NPAS3Q8IXF0 AC233280.20-201ENST00000637412 416 ntBASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms