Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC105420.1-201ENST00000504389 582 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 SCARNA18.1-201ENST00000516330 83 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 RNA5SP438-201ENST00000516561 112 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 MAPK10-350ENST00000641777 965 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SKA3Q8IX90 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC020656.2-201ENST00000613291 5309 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SKA3Q8IX90 AC027088.4-201ENST00000611559 1947 ntBASIC5.17□□□□□ -1.58
SKA3Q8IX90 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC002525.1-201ENST00000624392 1622 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 RNA5SP477-201ENST00000362639 119 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC016739.1-201ENST00000405359 345 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 BX284632.2-201ENST00000421091 399 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 NDUFS5P5-201ENST00000437256 321 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AL512605.1-202ENST00000441919 381 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AL359955.2-201ENST00000445380 353 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 RPS4XP12-201ENST00000461747 709 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 RPL12P24-201ENST00000474907 486 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 ST13P12-201ENST00000508958 1094 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 Y_RNA.667-201ENST00000516212 107 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 OR8Q1P-201ENST00000526467 655 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 PCNAP4-201ENST00000532690 730 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AL139099.4-201ENST00000614802 114 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.16□□□□□ -1.58
SKA3Q8IX90 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.16□□□□□ -1.58
SKA3Q8IX90 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SKA3Q8IX90 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SKA3Q8IX90 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
SKA3Q8IX90 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC066692.1-201ENST00000421721 457 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 NPM1P18-201ENST00000434232 732 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC023141.8-201ENST00000442554 208 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AL122020.1-201ENST00000472287 459 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SKA3Q8IX90 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC022616.2-201ENST00000523185 300 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC005363.1-201ENST00000530779 351 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AP004609.2-201ENST00000532177 190 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.15□□□□□ -1.59
SKA3Q8IX90 AL359219.2-201ENST00000555184 348 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC006530.1-201ENST00000555980 571 ntBASIC5.15□□□□□ -1.59
SKA3Q8IX90 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms