Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC074141.1-201ENST00000588129 2995 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC005618.1-201ENST00000606901 3148 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
USP39Q53GS9 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.47□□□□□ -1.37
USP39Q53GS9 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.47□□□□□ -1.37
USP39Q53GS9 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AL451046.1-201ENST00000406097 534 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
USP39Q53GS9 SLC20A1P1-201ENST00000413906 956 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AL121882.1-201ENST00000422893 417 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AL445528.1-201ENST00000426330 420 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 MTND1P20-201ENST00000430341 950 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 TRBV26OR9-2-201ENST00000432077 293 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AL139156.3-201ENST00000454802 394 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC116562.1-201ENST00000485355 781 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.47□□□□□ -1.37
USP39Q53GS9 KHDC1P1-201ENST00000511053 508 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC6.47□□□□□ -1.37
USP39Q53GS9 RNU6-760P-201ENST00000516078 97 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 RNU6-1102P-201ENST00000516149 96 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC036111.2-201ENST00000533247 901 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AL356057.1-201ENST00000533798 831 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC092332.1-201ENST00000563684 829 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AL953862.2-201ENST00000603089 820 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC011939.3-201ENST00000613686 466 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 MIR8084-201ENST00000614105 89 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC024884.1-201ENST00000620583 399 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC068792.1-201ENST00000621354 417 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC011330.2-201ENST00000621680 635 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 LINC02211-204ENST00000642024 1070 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 TNPO1P2-201ENST00000426249 2665 ntBASIC6.47□□□□□ -1.37
USP39Q53GS9 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.47□□□□□ -1.37
USP39Q53GS9 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.47□□□□□ -1.37
USP39Q53GS9 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
USP39Q53GS9 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
USP39Q53GS9 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.46□□□□□ -1.37
USP39Q53GS9 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
USP39Q53GS9 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
USP39Q53GS9 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.46□□□□□ -1.37
USP39Q53GS9 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
USP39Q53GS9 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 RNA5SP333-201ENST00000363466 118 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 RNA5SP334-201ENST00000364825 118 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 RN7SKP81-201ENST00000365603 331 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.46□□□□□ -1.38
USP39Q53GS9 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC066692.1-201ENST00000421721 457 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
USP39Q53GS9 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC6.46□□□□□ -1.38
USP39Q53GS9 AC010153.1-201ENST00000432862 727 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 MED28P4-201ENST00000433137 572 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 TRAPPC13P1-201ENST00000435991 1062 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 PRDX3P4-201ENST00000470828 747 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC098847.1-201ENST00000473094 348 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC6.46□□□□□ -1.38
USP39Q53GS9 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.46□□□□□ -1.38
USP39Q53GS9 RPS26P24-201ENST00000497656 331 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.46□□□□□ -1.38
USP39Q53GS9 MTATP6P1-201ENST00000514057 681 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 PRMT5P1-201ENST00000514351 598 ntBASIC6.46□□□□□ -1.38
USP39Q53GS9 RNA5SP206-201ENST00000516703 121 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms