Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC245060.4-201ENST00000413293 1121 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 RPS4XP5-201ENST00000419038 768 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC244453.4-201ENST00000419150 388 ntBASIC5.45□□□□□ -1.54
SOX3P41225 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.45□□□□□ -1.54
SOX3P41225 AC126120.1-201ENST00000431082 470 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 ARL4AP4-201ENST00000434170 518 ntBASIC5.45□□□□□ -1.54
SOX3P41225 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.45□□□□□ -1.54
SOX3P41225 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 PSMA2P2-201ENST00000504319 686 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC113398.2-201ENST00000507630 558 ntBASIC5.45□□□□□ -1.54
SOX3P41225 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.45□□□□□ -1.54
SOX3P41225 AP000648.1-201ENST00000529682 397 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.45□□□□□ -1.54
SOX3P41225 TXNP4-201ENST00000575018 310 ntBASIC5.45□□□□□ -1.54
SOX3P41225 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 COX6CP7-201ENST00000597056 208 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AL031601.1-201ENST00000605702 394 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AC100814.1-201ENST00000606963 623 ntBASIC5.45□□□□□ -1.54
SOX3P41225 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 OR8G3P-202ENST00000641572 1255 ntBASIC5.45□□□□□ -1.54
SOX3P41225 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.45□□□□□ -1.54
SOX3P41225 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 THAP12P9-201ENST00000503971 2360 ntBASIC5.45□□□□□ -1.54
SOX3P41225 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
SOX3P41225 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.45□□□□□ -1.54
SOX3P41225 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
SOX3P41225 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SOX3P41225 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SOX3P41225 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SOX3P41225 PDZK1P1-202ENST00000425209 1350 ntBASIC5.44□□□□□ -1.54
SOX3P41225 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 RNA5SP500-201ENST00000364486 119 ntBASIC5.44□□□□□ -1.54
SOX3P41225 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SOX3P41225 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.44□□□□□ -1.54
SOX3P41225 NME1P1-201ENST00000420914 382 ntBASIC5.44□□□□□ -1.54
SOX3P41225 TRGV7-201ENST00000427089 353 ntBASIC5.44□□□□□ -1.54
SOX3P41225 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.44□□□□□ -1.54
SOX3P41225 NPM1P48-201ENST00000436002 853 ntBASIC5.44□□□□□ -1.54
SOX3P41225 AL512637.1-201ENST00000439523 1231 ntBASIC5.44□□□□□ -1.54
SOX3P41225 CUBNP2-201ENST00000443534 1139 ntBASIC5.44□□□□□ -1.54
SOX3P41225 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.44□□□□□ -1.54
SOX3P41225 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.44□□□□□ -1.54
SOX3P41225 UBFD1P1-201ENST00000473259 814 ntBASIC5.44□□□□□ -1.54
SOX3P41225 AC007998.1-201ENST00000474156 672 ntBASIC5.44□□□□□ -1.54
SOX3P41225 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 MTND3P6-201ENST00000485242 339 ntBASIC5.44□□□□□ -1.54
SOX3P41225 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 GAPDHP71-201ENST00000511530 1003 ntBASIC5.44□□□□□ -1.54
SOX3P41225 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.44□□□□□ -1.54
SOX3P41225 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.44□□□□□ -1.54
SOX3P41225 AC022826.1-201ENST00000519383 805 ntBASIC5.44□□□□□ -1.54
SOX3P41225 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.44□□□□□ -1.54
SOX3P41225 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SOX3P41225 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.44□□□□□ -1.54
SOX3P41225 GARSP1-201ENST00000570895 719 ntBASIC5.44□□□□□ -1.54
SOX3P41225 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
SOX3P41225 AL049840.6-201ENST00000604583 345 ntBASIC5.44□□□□□ -1.54
SOX3P41225 RPL12P48-201ENST00000605620 304 ntBASIC5.44□□□□□ -1.54
SOX3P41225 RNA5SP439-201ENST00000617595 124 ntBASIC5.44□□□□□ -1.54
SOX3P41225 AP005431.1-201ENST00000618479 319 ntBASIC5.44□□□□□ -1.54
SOX3P41225 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
SOX3P41225 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SOX3P41225 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SOX3P41225 ADAM24P-201ENST00000398655 2101 ntBASIC5.44□□□□□ -1.54
SOX3P41225 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SOX3P41225 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.43□□□□□ -1.54
SOX3P41225 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SOX3P41225 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SOX3P41225 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SOX3P41225 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SOX3P41225 AC130360.2-201ENST00000533477 1556 ntBASIC5.43□□□□□ -1.54
SOX3P41225 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms