Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 EI24P4-201ENST00000423683 1078 ntBASIC9.21□□□□□ -0.93
CUX1P39880 VN1R21P-201ENST00000426703 765 ntBASIC9.21□□□□□ -0.93
CUX1P39880 AL049745.1-201ENST00000433953 286 ntBASIC9.21□□□□□ -0.93
CUX1P39880 AC092647.2-201ENST00000452998 253 ntBASIC9.21□□□□□ -0.93
CUX1P39880 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC9.21□□□□□ -0.93
CUX1P39880 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC9.21□□□□□ -0.93
CUX1P39880 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC9.21□□□□□ -0.93
CUX1P39880 OR51A1P-201ENST00000511110 946 ntBASIC9.21□□□□□ -0.93
CUX1P39880 BRD9P1-201ENST00000529855 560 ntBASIC9.21□□□□□ -0.93
CUX1P39880 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC9.21□□□□□ -0.93
CUX1P39880 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC9.21□□□□□ -0.93
CUX1P39880 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC9.21□□□□□ -0.93
CUX1P39880 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC9.21□□□□□ -0.93
CUX1P39880 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC9.21□□□□□ -0.93
CUX1P39880 AC011447.4-201ENST00000587562 111 ntBASIC9.21□□□□□ -0.93
CUX1P39880 AL627230.1-201ENST00000613077 211 ntBASIC9.21□□□□□ -0.93
CUX1P39880 AL591926.8-201ENST00000616876 211 ntBASIC9.21□□□□□ -0.93
CUX1P39880 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.93
CUX1P39880 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.93
CUX1P39880 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
CUX1P39880 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
CUX1P39880 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
CUX1P39880 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC9.21□□□□□ -0.94
CUX1P39880 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
CUX1P39880 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC9.21□□□□□ -0.94
CUX1P39880 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
CUX1P39880 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC9.21□□□□□ -0.94
CUX1P39880 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC9.21□□□□□ -0.94
CUX1P39880 RN7SL346P-201ENST00000491561 294 ntBASIC9.21□□□□□ -0.94
CUX1P39880 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC9.21□□□□□ -0.94
CUX1P39880 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC9.21□□□□□ -0.94
CUX1P39880 RN7SKP147-201ENST00000517154 244 ntBASIC9.21□□□□□ -0.94
CUX1P39880 AP004607.2-201ENST00000533949 322 ntBASIC9.21□□□□□ -0.94
CUX1P39880 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC9.21□□□□□ -0.94
CUX1P39880 KCNMB3P1-202ENST00000493696 3389 ntBASIC9.2□□□□□ -0.94
CUX1P39880 INTS6P1-201ENST00000504674 2530 ntBASIC9.2□□□□□ -0.94
CUX1P39880 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 AC092070.2-203ENST00000598377 3644 ntBASIC9.2□□□□□ -0.94
CUX1P39880 MT-RNR2-201ENST00000387347 1559 ntBASIC9.2□□□□□ -0.94
CUX1P39880 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
CUX1P39880 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC9.2□□□□□ -0.94
CUX1P39880 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC9.2□□□□□ -0.94
CUX1P39880 ZNF840P-201ENST00000504759 1996 ntBASIC9.2□□□□□ -0.94
CUX1P39880 SNORA51.8-201ENST00000384234 132 ntBASIC9.2□□□□□ -0.94
CUX1P39880 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC9.2□□□□□ -0.94
CUX1P39880 RPL21P133-201ENST00000443666 476 ntBASIC9.2□□□□□ -0.94
CUX1P39880 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC9.2□□□□□ -0.94
CUX1P39880 AC004980.4-201ENST00000513375 203 ntBASIC9.2□□□□□ -0.94
CUX1P39880 CLMN-206ENST00000556441 452 ntTSL 5 BASIC9.2□□□□□ -0.94
CUX1P39880 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC9.2□□□□□ -0.94
CUX1P39880 HIRAP1-201ENST00000605318 787 ntBASIC9.2□□□□□ -0.94
CUX1P39880 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
CUX1P39880 AC119674.1-217ENST00000641942 1086 ntBASIC9.2□□□□□ -0.94
CUX1P39880 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
CUX1P39880 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
CUX1P39880 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
CUX1P39880 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
CUX1P39880 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX1P39880 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC9.19□□□□□ -0.94
CUX1P39880 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 AC013442.1-201ENST00000397347 228 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AC093162.1-201ENST00000419682 124 ntBASIC9.19□□□□□ -0.94
CUX1P39880 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX1P39880 AC093655.2-201ENST00000425735 631 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX1P39880 AC011753.3-201ENST00000443436 406 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AC009220.1-201ENST00000451614 275 ntBASIC9.19□□□□□ -0.94
CUX1P39880 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX1P39880 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX1P39880 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC9.19□□□□□ -0.94
CUX1P39880 PMS2P3-207ENST00000529061 717 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AP002373.2-201ENST00000541631 1060 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX1P39880 AC063949.1-201ENST00000552900 865 ntBASIC9.19□□□□□ -0.94
CUX1P39880 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC9.19□□□□□ -0.94
CUX1P39880 AL022394.1-201ENST00000606979 292 ntBASIC9.19□□□□□ -0.94
CUX1P39880 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
CUX1P39880 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
CUX1P39880 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
CUX1P39880 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
CUX1P39880 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC9.19□□□□□ -0.94
CUX1P39880 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 AL034546.1-201ENST00000623740 3693 ntBASIC9.19□□□□□ -0.94
CUX1P39880 AC083899.1-201ENST00000454465 3819 ntBASIC9.19□□□□□ -0.94
CUX1P39880 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
CUX1P39880 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC9.18□□□□□ -0.94
CUX1P39880 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
CUX1P39880 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.94
CUX1P39880 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC9.18□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms