Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 MTCYBP20-201ENST00000524239 1129 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AL445383.1-201ENST00000554689 874 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC025918.2-201ENST00000558683 763 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC090888.1-201ENST00000561335 1141 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC104229.1-201ENST00000561364 255 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AGGF1P7-201ENST00000562369 913 ntBASIC6.13□□□□□ -1.43
MSX2P35548 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 Z82195.1-201ENST00000604558 398 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC079610.2-201ENST00000604818 690 ntBASIC6.13□□□□□ -1.43
MSX2P35548 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AC131159.1-201ENST00000621854 213 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC073488.9-201ENST00000631601 754 ntBASIC6.13□□□□□ -1.43
MSX2P35548 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 MTND4P26-201ENST00000415971 1359 ntBASIC6.13□□□□□ -1.43
MSX2P35548 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 SGO1P1-201ENST00000603525 1447 ntBASIC6.13□□□□□ -1.43
MSX2P35548 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC053481.2-202ENST00000582394 1500 ntBASIC6.13□□□□□ -1.43
MSX2P35548 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 NAMPTP1-201ENST00000440465 2514 ntBASIC6.13□□□□□ -1.43
MSX2P35548 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
MSX2P35548 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX2P35548 RNA5SP114-201ENST00000363780 113 ntBASIC6.12□□□□□ -1.43
MSX2P35548 RNU4-68P-201ENST00000364314 141 ntBASIC6.12□□□□□ -1.43
MSX2P35548 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 RNU6-192P-201ENST00000391253 100 ntBASIC6.12□□□□□ -1.43
MSX2P35548 NHP2P2-201ENST00000396362 460 ntBASIC6.12□□□□□ -1.43
MSX2P35548 OR7E156P-201ENST00000400303 464 ntBASIC6.12□□□□□ -1.43
MSX2P35548 ST13P16-201ENST00000401760 781 ntBASIC6.12□□□□□ -1.43
MSX2P35548 FABP12P1-201ENST00000401911 322 ntBASIC6.12□□□□□ -1.43
MSX2P35548 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC6.12□□□□□ -1.43
MSX2P35548 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 OR5AC1-201ENST00000429239 925 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
MSX2P35548 AL162231.2-201ENST00000434627 665 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 SHQ1P1-201ENST00000437111 1544 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 ARL4AP3-201ENST00000441452 574 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 MTND2P4-201ENST00000445034 1004 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AL022237.1-201ENST00000446663 358 ntBASIC6.12□□□□□ -1.43
MSX2P35548 RPL7AP71-201ENST00000451120 739 ntBASIC6.12□□□□□ -1.43
MSX2P35548 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 AC079193.1-201ENST00000460497 588 ntBASIC6.12□□□□□ -1.43
MSX2P35548 NDUFB4P1-201ENST00000462398 381 ntBASIC6.12□□□□□ -1.43
MSX2P35548 RPS26P6-201ENST00000475156 348 ntBASIC6.12□□□□□ -1.43
MSX2P35548 MTND2P14-201ENST00000482139 351 ntBASIC6.12□□□□□ -1.43
MSX2P35548 ANK3-213ENST00000486349 493 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC107401.1-201ENST00000503426 685 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.12□□□□□ -1.43
MSX2P35548 OR52H2P-201ENST00000514607 902 ntBASIC6.12□□□□□ -1.43
MSX2P35548 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 AC134698.4-201ENST00000523451 826 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AP003080.1-202ENST00000526526 915 ntBASIC6.12□□□□□ -1.43
MSX2P35548 OR4A2P-201ENST00000527276 913 ntBASIC6.12□□□□□ -1.43
MSX2P35548 SNRPCP6-201ENST00000528310 210 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AP001646.2-201ENST00000528645 1156 ntBASIC6.12□□□□□ -1.43
MSX2P35548 REG4-204ENST00000530654 612 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 AC130360.2-201ENST00000533477 1556 ntBASIC6.12□□□□□ -1.43
MSX2P35548 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX2P35548 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX2P35548 AC084824.1-201ENST00000550917 1005 ntBASIC6.12□□□□□ -1.43
MSX2P35548 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
MSX2P35548 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.12□□□□□ -1.43
MSX2P35548 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC6.12□□□□□ -1.43
MSX2P35548 MTND4P34-201ENST00000572715 1371 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms