Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC009362.1-201ENST00000427253 406 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 RNU7-140P-201ENST00000459546 60 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC063955.1-201ENST00000462872 685 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC084878.1-201ENST00000480555 648 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 SNRPCP11-201ENST00000492453 205 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 NIFKP7-201ENST00000503365 834 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 HSPD1P18-201ENST00000504252 244 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 IGLV1-41-201ENST00000519790 406 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 OSBPL9P2-201ENST00000526582 1228 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 OR5AP1P-201ENST00000529730 940 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 AP000879.2-201ENST00000530525 497 ntTSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC243972.3-201ENST00000539655 198 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.85□□□□□ -1.31
COL8A1P27658 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 FDPSP3-201ENST00000556903 1013 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 MIR3137-201ENST00000577367 75 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 RN7SL32P-201ENST00000580514 281 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 AL021918.1-201ENST00000603933 236 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 AL136363.1-201ENST00000605349 337 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC6.85□□□□□ -1.31
COL8A1P27658 DPH3-202ENST00000383775 3052 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 PRDM10-205ENST00000526082 3308 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 MICAL3-219ENST00000585038 3323 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 MPZL3-201ENST00000278949 3968 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 ADAM2-202ENST00000347580 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 AC133485.2-201ENST00000566232 2484 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 ABCA11P-202ENST00000504019 2110 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 STXBP5L-205ENST00000472879 3067 ntTSL 5 BASIC6.85□□□□□ -1.31
COL8A1P27658 EIF4BP4-201ENST00000441847 1780 ntBASIC6.85□□□□□ -1.31
COL8A1P27658 FRG2-201ENST00000378763 2084 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL8A1P27658 SHQ1-203ENST00000463369 2065 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 ANAPC5-208ENST00000535482 2077 ntTSL 2 BASIC6.85□□□□□ -1.31
COL8A1P27658 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 AL391095.1-201ENST00000422519 2004 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 CASP8-205ENST00000358485 2930 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 C1orf158-203ENST00000614859 3549 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 DLG2-218ENST00000524982 2872 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 CAB39-207ENST00000614925 1619 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 SERPINA9-203ENST00000380365 1333 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL8A1P27658 NNT-AS1-204ENST00000513560 4769 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 LINC00210-201ENST00000431637 1584 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL8A1P27658 RNA5SP389-201ENST00000362610 115 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 RNA5SP226-201ENST00000362653 115 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 RNA5SP141-201ENST00000364543 120 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC6.84□□□□□ -1.31
COL8A1P27658 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 RNU6-505P-201ENST00000384427 107 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 MIR191-201ENST00000384873 92 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 SEPT7P8-201ENST00000413308 775 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AC096644.3-201ENST00000416788 338 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AL713965.1-201ENST00000421166 230 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 OFD1P12Y-201ENST00000427963 1207 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 GAPDHP32-201ENST00000433816 998 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 Z97634.1-203ENST00000435229 471 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 DNAJA1P6-201ENST00000437347 354 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 RPL12P49-201ENST00000441100 121 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL8A1P27658 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 LINC00572-201ENST00000450264 575 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 snoU109.1-201ENST00000459339 135 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 Y_RNA.631-201ENST00000459607 101 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 RN7SL74P-201ENST00000464966 299 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 ZBTB20-AS4-201ENST00000472323 675 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 RN7SL861P-201ENST00000473793 285 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 MTND1P3-201ENST00000484956 952 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 CCDC11P1-201ENST00000503137 1162 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms