Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 HSPA8P18-201ENST00000439846 1928 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 RPL23P2-201ENST00000320371 421 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 AL772161.1-201ENST00000439130 476 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 HIGD1AP8-201ENST00000453927 274 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 RPL7P45-201ENST00000455851 743 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 RN7SL447P-201ENST00000494711 245 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A1P20908 AC078878.1-201ENST00000539832 958 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 AC139697.1-201ENST00000548429 745 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.43□□□□□ -1.54
COL5A1P20908 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 WBP1LP8-201ENST00000617401 327 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL5A1P20908 LINC01739-205ENST00000641890 573 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 AC006206.1-201ENST00000544842 3387 ntBASIC5.43□□□□□ -1.54
COL5A1P20908 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.43□□□□□ -1.54
COL5A1P20908 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL5A1P20908 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL5A1P20908 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.42□□□□□ -1.54
COL5A1P20908 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL5A1P20908 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL5A1P20908 AL645733.1-201ENST00000402250 217 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A1P20908 KRT8P51-201ENST00000438938 274 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 AC009220.1-201ENST00000451614 275 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A1P20908 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
COL5A1P20908 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.42□□□□□ -1.54
COL5A1P20908 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.42□□□□□ -1.54
COL5A1P20908 AC087763.1-201ENST00000603391 286 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 AL353729.2-201ENST00000605859 1249 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 AC009163.6-201ENST00000612367 342 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 AP003789.1-201ENST00000617737 605 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.42□□□□□ -1.54
COL5A1P20908 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL5A1P20908 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL5A1P20908 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
COL5A1P20908 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A1P20908 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL5A1P20908 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL5A1P20908 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.41□□□□□ -1.54
COL5A1P20908 RBMY2QP-201ENST00000429799 1147 ntBASIC5.41□□□□□ -1.54
COL5A1P20908 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.41□□□□□ -1.54
COL5A1P20908 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.41□□□□□ -1.54
COL5A1P20908 AC015864.1-201ENST00000496512 544 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms