Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
SDC1P18827 U3.23-201ENST00000391132 200 ntBASIC5.38□□□□□ -1.55
SDC1P18827 U3.28-201ENST00000391249 210 ntBASIC5.38□□□□□ -1.55
SDC1P18827 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SDC1P18827 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
SDC1P18827 RPS6P23-201ENST00000413224 722 ntBASIC5.38□□□□□ -1.55
SDC1P18827 AL354766.1-201ENST00000423396 542 ntBASIC5.38□□□□□ -1.55
SDC1P18827 AC244033.1-201ENST00000426826 870 ntBASIC5.38□□□□□ -1.55
SDC1P18827 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.38□□□□□ -1.55
SDC1P18827 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.38□□□□□ -1.55
SDC1P18827 NANOGP9-201ENST00000439890 892 ntBASIC5.38□□□□□ -1.55
SDC1P18827 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 AC122718.2-201ENST00000505325 591 ntBASIC5.38□□□□□ -1.55
SDC1P18827 DUTP7-201ENST00000507982 486 ntBASIC5.38□□□□□ -1.55
SDC1P18827 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.38□□□□□ -1.55
SDC1P18827 MIR6889-201ENST00000613185 59 ntBASIC5.38□□□□□ -1.55
SDC1P18827 AC024884.1-201ENST00000620583 399 ntBASIC5.38□□□□□ -1.55
SDC1P18827 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.38□□□□□ -1.55
SDC1P18827 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.38□□□□□ -1.55
SDC1P18827 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 SYT14P1-202ENST00000600441 1448 ntBASIC5.38□□□□□ -1.55
SDC1P18827 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.38□□□□□ -1.55
SDC1P18827 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 GTF2IP4-201ENST00000453092 2054 ntBASIC5.38□□□□□ -1.55
SDC1P18827 AC109446.4-201ENST00000623235 2755 ntBASIC5.38□□□□□ -1.55
SDC1P18827 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 AC093671.1-201ENST00000624981 2929 ntBASIC5.37□□□□□ -1.55
SDC1P18827 GAPDHP24-201ENST00000328713 983 ntBASIC5.37□□□□□ -1.55
SDC1P18827 SNORA70.6-201ENST00000383934 134 ntBASIC5.37□□□□□ -1.55
SDC1P18827 TRAV35-201ENST00000390462 330 ntBASIC5.37□□□□□ -1.55
SDC1P18827 ADAM24P-201ENST00000398655 2101 ntBASIC5.37□□□□□ -1.55
SDC1P18827 MIR1203-201ENST00000408812 85 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.37□□□□□ -1.55
SDC1P18827 AL133482.1-201ENST00000415988 498 ntBASIC5.37□□□□□ -1.55
SDC1P18827 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.37□□□□□ -1.55
SDC1P18827 MRPS21P2-201ENST00000424704 264 ntBASIC5.37□□□□□ -1.55
SDC1P18827 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 RPS27AP6-201ENST00000427962 448 ntBASIC5.37□□□□□ -1.55
SDC1P18827 NXT1P1-201ENST00000458481 316 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.37□□□□□ -1.55
SDC1P18827 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.37□□□□□ -1.55
SDC1P18827 AC027369.2-201ENST00000528030 440 ntBASIC5.37□□□□□ -1.55
SDC1P18827 PMS2P3-207ENST00000529061 717 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AP000648.1-201ENST00000529682 397 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 MIR4311-201ENST00000580794 100 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AP001542.1-201ENST00000591314 200 ntBASIC5.37□□□□□ -1.55
SDC1P18827 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.37□□□□□ -1.55
SDC1P18827 AC063977.5-201ENST00000601044 974 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC015849.6-201ENST00000605454 474 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AL031601.1-201ENST00000605702 394 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AL139124.1-201ENST00000609123 421 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC087821.1-201ENST00000623639 567 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AC021766.1-201ENST00000624404 741 ntBASIC5.37□□□□□ -1.55
SDC1P18827 AP000550.3-201ENST00000637734 379 ntBASIC5.37□□□□□ -1.55
SDC1P18827 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 AC132825.8-201ENST00000640783 297 ntBASIC5.37□□□□□ -1.55
SDC1P18827 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.37□□□□□ -1.55
SDC1P18827 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SDC1P18827 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
SDC1P18827 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.37□□□□□ -1.55
SDC1P18827 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
SDC1P18827 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SDC1P18827 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 AC007842.1-201ENST00000597336 2039 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC016745.2-201ENST00000608834 3443 ntBASIC5.36□□□□□ -1.55
SDC1P18827 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SDC1P18827 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SDC1P18827 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms