Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC12.26□□□□□ -0.45
HSPG2P98160 AC092329.2-201ENST00000598402 547 ntBASIC12.26□□□□□ -0.45
HSPG2P98160 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
HSPG2P98160 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC12.26□□□□□ -0.45
HSPG2P98160 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
HSPG2P98160 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.26□□□□□ -0.45
HSPG2P98160 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC12.26□□□□□ -0.45
HSPG2P98160 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HSPG2P98160 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC12.25□□□□□ -0.45
HSPG2P98160 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC12.25□□□□□ -0.45
HSPG2P98160 AC120114.3-201ENST00000611923 658 ntBASIC12.25□□□□□ -0.45
HSPG2P98160 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC12.25□□□□□ -0.45
HSPG2P98160 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HSPG2P98160 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HSPG2P98160 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 AP006587.1-201ENST00000534129 1502 ntBASIC12.25□□□□□ -0.45
HSPG2P98160 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC12.25□□□□□ -0.45
HSPG2P98160 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HSPG2P98160 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC12.25□□□□□ -0.45
HSPG2P98160 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HSPG2P98160 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HSPG2P98160 PTPA-216ENST00000432651 857 ntTSL 2 BASIC12.25□□□□□ -0.45
HSPG2P98160 PPIE-208ENST00000470213 927 ntTSL 3 BASIC12.25□□□□□ -0.45
HSPG2P98160 AL662844.1-201ENST00000546340 181 ntBASIC12.25□□□□□ -0.45
HSPG2P98160 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC12.24□□□□□ -0.45
HSPG2P98160 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 C1orf229-201ENST00000623686 2258 ntBASIC12.24□□□□□ -0.45
HSPG2P98160 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.24□□□□□ -0.45
HSPG2P98160 KRT18P31-201ENST00000506277 1292 ntBASIC12.24□□□□□ -0.45
HSPG2P98160 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC12.24□□□□□ -0.45
HSPG2P98160 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.24□□□□□ -0.45
HSPG2P98160 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.24□□□□□ -0.45
HSPG2P98160 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.24□□□□□ -0.45
HSPG2P98160 IL11-204ENST00000590625 1028 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 CALM3-211ENST00000598871 561 ntTSL 4 BASIC12.24□□□□□ -0.45
HSPG2P98160 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC12.24□□□□□ -0.45
HSPG2P98160 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC12.24□□□□□ -0.45
HSPG2P98160 BX119927.1-201ENST00000636596 1552 ntBASIC12.24□□□□□ -0.45
HSPG2P98160 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC12.24□□□□□ -0.45
HSPG2P98160 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HSPG2P98160 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.24□□□□□ -0.45
HSPG2P98160 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC12.23□□□□□ -0.45
HSPG2P98160 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 AP003041.3-201ENST00000527151 707 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC12.23□□□□□ -0.45
HSPG2P98160 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.23□□□□□ -0.45
HSPG2P98160 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HSPG2P98160 AC117500.6-201ENST00000624871 588 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HSPG2P98160 AC016734.2-201ENST00000624325 1377 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 GOLGA6L3-201ENST00000507199 1679 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 KRT8P20-201ENST00000423953 1409 ntBASIC12.23□□□□□ -0.45
HSPG2P98160 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
HSPG2P98160 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 STAC-204ENST00000457375 1366 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC12.23□□□□□ -0.45
HSPG2P98160 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HSPG2P98160 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms