Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 RPL23AP18-201ENST00000416139 468 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 FMO7P-201ENST00000436045 768 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC006335.2-201ENST00000437993 330 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AL391987.1-201ENST00000441025 200 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC109481.1-201ENST00000509173 282 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC021146.10-201ENST00000515628 706 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 DHFRP1-201ENST00000579682 559 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC107993.1-201ENST00000591343 684 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AL034546.1-201ENST00000623740 3693 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 PWAR1-201ENST00000624188 2414 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ABCA11P-202ENST00000504019 2110 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 KYNUP3-201ENST00000574386 1341 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 RPL11P3-201ENST00000395256 523 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 RNA5SP178-201ENST00000410380 128 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC074087.1-201ENST00000512059 724 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 TMEM97P2-201ENST00000517841 403 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 GTF2IP11-201ENST00000526931 420 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC018558.5-201ENST00000565840 952 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC012146.2-201ENST00000576545 416 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 MIR4505-201ENST00000582238 73 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AC060780.2-201ENST00000589047 198 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AP001267.4-201ENST00000602598 545 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AL352984.2-201ENST00000611153 546 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 AL137058.3-201ENST00000624531 3099 ntBASIC5.73□□□□□ -1.49
LHX3Q9UBR4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
LHX3Q9UBR4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL359955.1-201ENST00000455242 3275 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 AL591135.1-201ENST00000401578 5914 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
LHX3Q9UBR4 LINC01963-201ENST00000562038 3148 ntBASIC5.72□□□□□ -1.49
LHX3Q9UBR4 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms