Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS39Q96JC1 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS39Q96JC1 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.84□□□□□ -1.48
VPS39Q96JC1 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
VPS39Q96JC1 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.84□□□□□ -1.48
VPS39Q96JC1 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.84□□□□□ -1.48
VPS39Q96JC1 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 SELENOWP1-201ENST00000322792 252 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 RNA5SP91-201ENST00000390902 119 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 RBBP4P5-201ENST00000398583 1266 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC098592.2-201ENST00000413158 265 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AL354868.1-201ENST00000417077 482 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 TRGV7-201ENST00000427089 353 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 CLNS1AP1-201ENST00000435954 682 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC015983.1-201ENST00000441577 373 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC099521.1-201ENST00000482557 334 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 DUX4L52-201ENST00000549363 777 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 NANOGP3-201ENST00000605855 286 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 uc_338.31-201ENST00000615595 186 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC079776.5-201ENST00000641920 211 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AC232271.1-201ENST00000602455 2715 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 PSG10P-201ENST00000501199 1500 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS39Q96JC1 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS39Q96JC1 AL034546.1-201ENST00000623740 3693 ntBASIC5.83□□□□□ -1.48
VPS39Q96JC1 AP004607.3-201ENST00000530354 3915 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 GVINP1-202ENST00000531871 7271 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 AL355488.2-201ENST00000609909 2850 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 UGT2B24P-201ENST00000514441 1597 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 RN7SKP86-201ENST00000410454 332 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 MRPS21P2-201ENST00000424704 264 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 TUBB4BP6-201ENST00000437576 479 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 RPL6P30-201ENST00000443382 862 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 RPL5P7-201ENST00000444235 813 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 MEMO1P4-201ENST00000453590 386 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AC112484.3-201ENST00000505910 329 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 RN7SKP34-201ENST00000516142 244 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 AP005119.1-201ENST00000580956 292 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS39Q96JC1 Z95327.3-201ENST00000610385 572 ntBASIC5.82□□□□□ -1.48
VPS39Q96JC1 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.82□□□□□ -1.48
VPS39Q96JC1 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms