Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXA1P49639 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXA1P49639 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC5.06□□□□□ -1.6
HOXA1P49639 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXA1P49639 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXA1P49639 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXA1P49639 AP003499.2-201ENST00000624100 483 ntBASIC5.06□□□□□ -1.6
HOXA1P49639 AC003992.1-201ENST00000635364 557 ntBASIC5.06□□□□□ -1.6
HOXA1P49639 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXA1P49639 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXA1P49639 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXA1P49639 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
HOXA1P49639 AL031595.2-201ENST00000624215 19071 ntBASIC5.06□□□□□ -1.6
HOXA1P49639 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXA1P49639 THAP12P5-201ENST00000405864 2275 ntBASIC5.06□□□□□ -1.6
HOXA1P49639 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
HOXA1P49639 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.05□□□□□ -1.6
HOXA1P49639 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 RNU6-697P-201ENST00000363348 107 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 U3.7-201ENST00000363668 216 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC5.05□□□□□ -1.6
HOXA1P49639 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 MRPS6P2-201ENST00000381143 370 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 MIR620-201ENST00000385232 95 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC019178.1-201ENST00000392337 440 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL589794.1-201ENST00000424971 390 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 VN1R53P-201ENST00000429536 957 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 DIRC3-AS1-201ENST00000452813 557 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 RARRES2P3-201ENST00000457739 473 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
HOXA1P49639 RN7SL714P-201ENST00000487050 298 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC010343.2-201ENST00000510162 224 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 RNU6-491P-201ENST00000516099 110 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXA1P49639 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC005519.1-201ENST00000554490 601 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 AC092868.3-201ENST00000560515 784 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 MED31-202ENST00000574128 619 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 MIR3189-201ENST00000578735 73 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
HOXA1P49639 SYPL1P2-201ENST00000582878 727 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 BNIP3P40-201ENST00000596017 556 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC004805.3-201ENST00000603178 310 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 RPAP2P1-201ENST00000603626 1168 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 RPS4XP21-201ENST00000603814 750 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 AC006924.1-201ENST00000610750 559 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HOXA1P49639 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 RBPJP5-201ENST00000449433 1447 ntBASIC5.05□□□□□ -1.6
HOXA1P49639 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXA1P49639 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC009501.3-201ENST00000605001 1352 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.04□□□□□ -1.6
HOXA1P49639 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
HOXA1P49639 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 MTND4P9-201ENST00000507819 1346 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 AP001541.1-201ENST00000623322 1904 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HOXA1P49639 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXA1P49639 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
HOXA1P49639 RNA5SP140-201ENST00000364524 92 ntBASIC5.04□□□□□ -1.6
HOXA1P49639 RN7SKP191-201ENST00000364713 306 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms