Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 AC139713.1-202ENST00000512366 460 ntBASIC6.14□□□□□ -1.43
MSX2P35548 SNORA3.4-201ENST00000515969 96 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 AC078860.1-201ENST00000546601 527 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC6.14□□□□□ -1.43
MSX2P35548 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC6.14□□□□□ -1.43
MSX2P35548 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 AC233702.7-202ENST00000582941 211 ntBASIC6.14□□□□□ -1.43
MSX2P35548 MIR4428-201ENST00000584884 73 ntBASIC6.14□□□□□ -1.43
MSX2P35548 U91328.4-201ENST00000608919 517 ntBASIC6.14□□□□□ -1.43
MSX2P35548 AL138960.1-201ENST00000613838 513 ntBASIC6.14□□□□□ -1.43
MSX2P35548 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 DLST-216ENST00000626051 252 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 AC005261.4-201ENST00000600047 1385 ntBASIC6.14□□□□□ -1.43
MSX2P35548 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
MSX2P35548 ZNF876P-202ENST00000398732 1485 ntBASIC6.14□□□□□ -1.43
MSX2P35548 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
MSX2P35548 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX2P35548 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 AC100810.3-201ENST00000633189 2240 ntBASIC6.13□□□□□ -1.43
MSX2P35548 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC087516.1-201ENST00000561236 2428 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 OR10D1P-201ENST00000355343 936 ntBASIC6.13□□□□□ -1.43
MSX2P35548 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 OR8V1P-201ENST00000395193 873 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 AL356131.1-201ENST00000405826 414 ntBASIC6.13□□□□□ -1.43
MSX2P35548 OR2W4P-201ENST00000406496 926 ntBASIC6.13□□□□□ -1.43
MSX2P35548 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 U3.43-201ENST00000410734 213 ntBASIC6.13□□□□□ -1.43
MSX2P35548 SNX18P13-201ENST00000412442 529 ntBASIC6.13□□□□□ -1.43
MSX2P35548 CBX1P3-201ENST00000413296 527 ntBASIC6.13□□□□□ -1.43
MSX2P35548 OR52N3P-201ENST00000413417 934 ntBASIC6.13□□□□□ -1.43
MSX2P35548 RPS26P38-201ENST00000414476 348 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 CYP4F30P-202ENST00000420048 405 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AC245884.2-201ENST00000426257 404 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC005345.1-201ENST00000431868 217 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 NIP7P1-201ENST00000433227 512 ntBASIC6.13□□□□□ -1.43
MSX2P35548 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 ATP5LP4-201ENST00000434169 307 ntBASIC6.13□□□□□ -1.43
MSX2P35548 MRPS21P3-201ENST00000436696 262 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC073052.1-201ENST00000440417 714 ntBASIC6.13□□□□□ -1.43
MSX2P35548 SNX18P9-201ENST00000440580 835 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC118469.1-201ENST00000442943 488 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 VN1R38P-201ENST00000450265 887 ntBASIC6.13□□□□□ -1.43
MSX2P35548 ZNF736P5Y-201ENST00000451173 805 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC6.13□□□□□ -1.43
MSX2P35548 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 USP9YP25-201ENST00000457708 443 ntBASIC6.13□□□□□ -1.43
MSX2P35548 SNX18P26-201ENST00000458433 740 ntBASIC6.13□□□□□ -1.43
MSX2P35548 RN7SL221P-201ENST00000466190 281 ntBASIC6.13□□□□□ -1.43
MSX2P35548 MTND4LP3-201ENST00000468320 276 ntBASIC6.13□□□□□ -1.43
MSX2P35548 RN7SL654P-201ENST00000479178 292 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC093719.1-201ENST00000480427 441 ntBASIC6.13□□□□□ -1.43
MSX2P35548 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX2P35548 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX2P35548 AC091849.1-201ENST00000509920 121 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC011352.1-201ENST00000512300 793 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 MRPS33P3-201ENST00000513456 322 ntBASIC6.13□□□□□ -1.43
MSX2P35548 DCAF13P2-201ENST00000514188 555 ntBASIC6.13□□□□□ -1.43
MSX2P35548 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX2P35548 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX2P35548 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms