Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHMT2P34897 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHMT2P34897 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHMT2P34897 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHMT2P34897 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC114774.1-201ENST00000507410 1770 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.65□□□□□ -1.5
SHMT2P34897 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SHMT2P34897 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHMT2P34897 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.65□□□□□ -1.5
SHMT2P34897 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHMT2P34897 MIR375-201ENST00000362103 64 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 RNA5SP284-201ENST00000384547 118 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC009506.2-201ENST00000420635 840 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 AC096775.1-201ENST00000437724 448 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 AC015983.1-201ENST00000441577 373 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC108751.3-201ENST00000461814 1020 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 AL157777.1-201ENST00000468100 304 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AL121594.2-201ENST00000541658 472 ntBASIC5.65□□□□□ -1.5
SHMT2P34897 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.65□□□□□ -1.5
SHMT2P34897 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.65□□□□□ -1.5
SHMT2P34897 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.65□□□□□ -1.5
SHMT2P34897 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.65□□□□□ -1.5
SHMT2P34897 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SHMT2P34897 AC106872.5-201ENST00000508856 1416 ntBASIC5.65□□□□□ -1.51
SHMT2P34897 AL034546.1-201ENST00000623740 3693 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.64□□□□□ -1.51
SHMT2P34897 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 AC099670.2-201ENST00000435130 321 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 RPL23AP19-201ENST00000436229 369 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC007998.1-201ENST00000474156 672 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.64□□□□□ -1.51
SHMT2P34897 snoU109.5-201ENST00000516231 132 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.64□□□□□ -1.51
SHMT2P34897 AL163952.1-202ENST00000569625 600 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 AP001496.3-201ENST00000580230 913 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 AC006115.2-201ENST00000596823 202 ntBASIC5.64□□□□□ -1.51
SHMT2P34897 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
SHMT2P34897 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHMT2P34897 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHMT2P34897 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.64□□□□□ -1.51
SHMT2P34897 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SHMT2P34897 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SHMT2P34897 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SHMT2P34897 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SHMT2P34897 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SHMT2P34897 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.63□□□□□ -1.51
SHMT2P34897 MRPL53P1-201ENST00000414323 319 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.63□□□□□ -1.51
SHMT2P34897 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.63□□□□□ -1.51
SHMT2P34897 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC5.63□□□□□ -1.51
SHMT2P34897 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.63□□□□□ -1.51
SHMT2P34897 RPL12P24-201ENST00000474907 486 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 RPS17P15-201ENST00000475609 349 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 AC022215.1-201ENST00000481770 362 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHMT2P34897 PSMA2P2-201ENST00000504319 686 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
SHMT2P34897 UGT2A3P7-201ENST00000510485 734 ntBASIC5.63□□□□□ -1.51
SHMT2P34897 SNORD46.2-201ENST00000516021 102 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms