Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RMRPP5-201ENST00000411156 267 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RPS6P23-201ENST00000413224 722 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC113412.1-201ENST00000425840 504 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 NAP1L4P2-201ENST00000425958 899 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 Z84478.1-201ENST00000438230 1219 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC002504.1-201ENST00000438281 691 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC005297.1-201ENST00000444765 862 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RN7SL72P-201ENST00000460697 269 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RPS7P6-201ENST00000485777 579 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC104109.1-201ENST00000498563 436 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 IGLVIV-64-201ENST00000518581 301 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC139697.1-201ENST00000548429 745 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 IGBP1P1-201ENST00000554337 1009 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC090286.3-201ENST00000573133 187 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 NANOGP3-201ENST00000605855 286 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC018690.1-201ENST00000608144 626 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC090607.5-201ENST00000615692 224 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC138627.1-204ENST00000641894 765 ntBASIC5.76□□□□□ -1.49
LHX3Q9UBR4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
LHX3Q9UBR4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 LINC02019-201ENST00000608605 2060 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 YES1P1-201ENST00000418510 1628 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 SDHDP6-201ENST00000414693 480 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC242426.1-201ENST00000435270 960 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 MEMO1P4-201ENST00000453590 386 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 RPS27AP2-201ENST00000457576 465 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC087672.1-201ENST00000479876 766 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 PDCL3P4-201ENST00000489621 720 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 DUTP7-201ENST00000507982 486 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 ST13P12-201ENST00000508958 1094 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 IGLV3-24-201ENST00000517477 197 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AGGF1P7-201ENST00000562369 913 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 CU639417.4-201ENST00000623928 207 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AL390318.1-201ENST00000624564 687 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC008691.1-209ENST00000642094 814 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC011933.2-201ENST00000578539 2790 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC073365.1-203ENST00000641055 1992 ntBASIC5.75□□□□□ -1.49
LHX3Q9UBR4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
LHX3Q9UBR4 AC114786.1-201ENST00000512892 1415 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AP000641.1-201ENST00000531988 1639 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
LHX3Q9UBR4 RN7SKP81-201ENST00000365603 331 ntBASIC5.74□□□□□ -1.49
LHX3Q9UBR4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms