Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC005632.2-201ENST00000564271 828 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AL078601.3-201ENST00000573303 535 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 MIR4502-201ENST00000580432 81 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 MIR4271-201ENST00000582451 67 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC125494.2-201ENST00000602431 657 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 SMIM12P1-201ENST00000603004 274 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AL356752.1-201ENST00000615844 593 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC073593.1-201ENST00000624500 411 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC004808.2-201ENST00000627965 773 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 PARP4P2-201ENST00000446672 3326 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 AC109446.4-201ENST00000623235 2755 ntBASIC5.15□□□□□ -1.59
NKX3-1Q99801 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.15□□□□□ -1.59
NKX3-1Q99801 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
NKX3-1Q99801 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 U3.23-201ENST00000391132 200 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AL132875.1-201ENST00000403623 949 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 SNRPEP6-201ENST00000407465 277 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC245096.1-201ENST00000413104 546 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC007064.3-201ENST00000422608 359 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 NDUFA5P1-201ENST00000433858 341 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 POU5F1P5-201ENST00000445059 658 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 RPL23AP60-201ENST00000450011 454 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 RPL23AP40-201ENST00000487630 390 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AP005136.2-201ENST00000583253 1049 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC020915.5-201ENST00000596836 964 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AL023583.1-201ENST00000607518 1143 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC093388.1-201ENST00000609166 430 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AL135999.3-201ENST00000610501 812 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC008833.1-201ENST00000611633 691 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AC020923.1-201ENST00000624021 917 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 HPVC1-201ENST00000629899 1198 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 AL163152.1-201ENST00000642001 374 ntBASIC5.14□□□□□ -1.59
NKX3-1Q99801 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
NKX3-1Q99801 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
NKX3-1Q99801 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC083843.2-201ENST00000568248 6253 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 BCORP1-203ENST00000513194 5093 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC130304.1-201ENST00000622942 2385 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 866 ms