Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RAD17P2-201ENST00000451754 1977 ntBASIC9.28□□□□□ -0.92
CUX1P39880 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC9.28□□□□□ -0.92
CUX1P39880 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
CUX1P39880 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC9.28□□□□□ -0.92
CUX1P39880 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC9.28□□□□□ -0.92
CUX1P39880 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC9.28□□□□□ -0.92
CUX1P39880 AL672138.1-201ENST00000450604 1015 ntBASIC9.28□□□□□ -0.92
CUX1P39880 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC9.28□□□□□ -0.92
CUX1P39880 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC9.28□□□□□ -0.92
CUX1P39880 AC006115.2-201ENST00000596823 202 ntBASIC9.28□□□□□ -0.92
CUX1P39880 AP001885.1-201ENST00000621658 558 ntBASIC9.28□□□□□ -0.92
CUX1P39880 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC9.28□□□□□ -0.92
CUX1P39880 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC9.28□□□□□ -0.92
CUX1P39880 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC9.28□□□□□ -0.92
CUX1P39880 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 AC005034.3-201ENST00000604845 1747 ntBASIC9.28□□□□□ -0.92
CUX1P39880 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC9.28□□□□□ -0.92
CUX1P39880 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
CUX1P39880 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC9.27□□□□□ -0.92
CUX1P39880 MTHFD2P5-201ENST00000320415 844 ntBASIC9.27□□□□□ -0.93
CUX1P39880 MIR141-201ENST00000384975 95 ntBASIC9.27□□□□□ -0.93
CUX1P39880 RNU6ATAC21P-201ENST00000408656 126 ntBASIC9.27□□□□□ -0.93
CUX1P39880 RNA5SP487-201ENST00000410186 122 ntBASIC9.27□□□□□ -0.93
CUX1P39880 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC9.27□□□□□ -0.93
CUX1P39880 AC104837.2-201ENST00000427236 424 ntBASIC9.27□□□□□ -0.93
CUX1P39880 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC9.27□□□□□ -0.93
CUX1P39880 AC093890.1-201ENST00000502554 540 ntBASIC9.27□□□□□ -0.93
CUX1P39880 HMGB1P44-201ENST00000508597 572 ntBASIC9.27□□□□□ -0.93
CUX1P39880 OR51K1P-201ENST00000510214 950 ntBASIC9.27□□□□□ -0.93
CUX1P39880 RNA5SP373-201ENST00000517271 95 ntBASIC9.27□□□□□ -0.93
CUX1P39880 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC9.27□□□□□ -0.93
CUX1P39880 MIR4301-201ENST00000577203 66 ntBASIC9.27□□□□□ -0.93
CUX1P39880 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC9.27□□□□□ -0.93
CUX1P39880 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC9.27□□□□□ -0.93
CUX1P39880 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC9.27□□□□□ -0.93
CUX1P39880 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC9.27□□□□□ -0.93
CUX1P39880 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC9.27□□□□□ -0.93
CUX1P39880 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
CUX1P39880 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
CUX1P39880 AC006206.1-201ENST00000544842 3387 ntBASIC9.27□□□□□ -0.93
CUX1P39880 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
CUX1P39880 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
CUX1P39880 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
CUX1P39880 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC9.26□□□□□ -0.93
CUX1P39880 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 RHOT1P3-201ENST00000436571 331 ntBASIC9.26□□□□□ -0.93
CUX1P39880 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC9.26□□□□□ -0.93
CUX1P39880 AZGP1P2-201ENST00000454506 345 ntBASIC9.26□□□□□ -0.93
CUX1P39880 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC9.26□□□□□ -0.93
CUX1P39880 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC9.26□□□□□ -0.93
CUX1P39880 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC9.26□□□□□ -0.93
CUX1P39880 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC9.26□□□□□ -0.93
CUX1P39880 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC9.26□□□□□ -0.93
CUX1P39880 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC9.26□□□□□ -0.93
CUX1P39880 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
CUX1P39880 CASC19-281ENST00000642118 1554 ntBASIC9.26□□□□□ -0.93
CUX1P39880 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
CUX1P39880 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
CUX1P39880 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
CUX1P39880 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC9.26□□□□□ -0.93
CUX1P39880 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC9.26□□□□□ -0.93
CUX1P39880 SNURFL-201ENST00000309296 343 ntBASIC9.26□□□□□ -0.93
CUX1P39880 RPS3AP38-201ENST00000435889 763 ntBASIC9.26□□□□□ -0.93
CUX1P39880 AL596266.1-201ENST00000448132 400 ntBASIC9.26□□□□□ -0.93
CUX1P39880 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC9.26□□□□□ -0.93
CUX1P39880 RPS3AP53-201ENST00000454716 778 ntBASIC9.26□□□□□ -0.93
CUX1P39880 OSTCP1-201ENST00000455507 450 ntBASIC9.26□□□□□ -0.93
CUX1P39880 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC9.26□□□□□ -0.93
CUX1P39880 AC018552.1-201ENST00000562099 811 ntBASIC9.26□□□□□ -0.93
CUX1P39880 MIR378J-201ENST00000611988 109 ntBASIC9.26□□□□□ -0.93
CUX1P39880 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 CAST-222ENST00000508579 1758 ntTSL 2 BASIC9.25□□□□□ -0.93
CUX1P39880 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC9.25□□□□□ -0.93
CUX1P39880 OLMALINC-203ENST00000641087 3779 ntBASIC9.25□□□□□ -0.93
CUX1P39880 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC9.25□□□□□ -0.93
CUX1P39880 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC9.25□□□□□ -0.93
CUX1P39880 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC9.25□□□□□ -0.93
CUX1P39880 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 PANDAR-201ENST00000629595 1506 ntBASIC9.25□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms