Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HMGN2P47-201ENST00000559378 272 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 PPATP2-201ENST00000605635 508 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.93□□□□□ -1.3
SMARCA1P28370 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 AL033543.1-201ENST00000623440 13454 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 AF287957.1-201ENST00000607368 1595 ntBASIC6.93□□□□□ -1.3
SMARCA1P28370 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.93□□□□□ -1.3
SMARCA1P28370 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
SMARCA1P28370 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
SMARCA1P28370 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
SMARCA1P28370 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 SELENOWP1-201ENST00000322792 252 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
SMARCA1P28370 RN7SKP128-201ENST00000364270 303 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 RNA5SP211-201ENST00000365516 117 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 RCC2P2-201ENST00000422174 918 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC073464.3-201ENST00000422564 712 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC099677.3-201ENST00000427081 395 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.92□□□□□ -1.3
SMARCA1P28370 HMGN1P2-201ENST00000445197 310 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 MTND2P30-201ENST00000456663 382 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC124945.1-201ENST00000485133 188 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC138409.2-202ENST00000507274 458 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC010374.2-201ENST00000512933 535 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 SETP21-201ENST00000514799 892 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC060775.1-201ENST00000518241 520 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AP003102.1-201ENST00000525638 661 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC145423.1-201ENST00000605712 336 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AL391834.1-201ENST00000609609 560 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC6.92□□□□□ -1.3
SMARCA1P28370 AC034229.2-201ENST00000566945 2508 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.92□□□□□ -1.3
SMARCA1P28370 CR382285.2-201ENST00000624662 1495 ntBASIC6.92□□□□□ -1.3
SMARCA1P28370 AC027088.4-201ENST00000611559 1947 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC012078.1-201ENST00000405035 1646 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
SMARCA1P28370 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
SMARCA1P28370 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SMARCA1P28370 RNU4-39P-201ENST00000362455 127 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 RNU6-1331P-201ENST00000363658 106 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 SNORA27.3-201ENST00000364937 134 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
SMARCA1P28370 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC066692.1-201ENST00000421721 457 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC023141.6-201ENST00000429418 337 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC002069.1-201ENST00000429649 1159 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SMARCA1P28370 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
SMARCA1P28370 AL392003.1-201ENST00000434394 243 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 DNAJA1P5-201ENST00000440278 943 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC009963.4-201ENST00000448535 339 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AL445687.2-201ENST00000458156 728 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC117525.1-201ENST00000515228 503 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC244502.2-201ENST00000543361 851 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AL356801.1-201ENST00000559320 294 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC005726.4-201ENST00000582858 458 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.91□□□□□ -1.3
SMARCA1P28370 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.91□□□□□ -1.3
SMARCA1P28370 AC005776.1-201ENST00000603164 290 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AL365181.4-201ENST00000609800 547 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AC023510.2-201ENST00000622162 746 ntBASIC6.91□□□□□ -1.3
SMARCA1P28370 AP006248.3-201ENST00000623580 594 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 157.8 ms