Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC144833.1-201ENST00000567953 4089 ntBASIC5.73□□□□□ -1.49
SHOX2O60902 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.73□□□□□ -1.49
SHOX2O60902 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHOX2O60902 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.72□□□□□ -1.49
SHOX2O60902 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 AL359643.1-201ENST00000404109 423 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 RPL12P9-201ENST00000412942 488 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC5.72□□□□□ -1.49
SHOX2O60902 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 AC016772.1-201ENST00000444170 1261 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 PSAT1P4-201ENST00000466500 526 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 AL157777.1-201ENST00000468100 304 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 RPS4XP17-201ENST00000479057 754 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 RPL5P33-201ENST00000487833 905 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.72□□□□□ -1.49
SHOX2O60902 CHEK2P2-201ENST00000554701 672 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.72□□□□□ -1.49
SHOX2O60902 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 AC068408.1-201ENST00000577406 1144 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.72□□□□□ -1.49
SHOX2O60902 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 AL357562.1-201ENST00000624911 609 ntBASIC5.72□□□□□ -1.49
SHOX2O60902 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.72□□□□□ -1.49
SHOX2O60902 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SHOX2O60902 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHOX2O60902 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.72□□□□□ -1.49
SHOX2O60902 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.71□□□□□ -1.49
SHOX2O60902 AC100757.1-201ENST00000616872 1835 ntBASIC5.71□□□□□ -1.49
SHOX2O60902 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SHOX2O60902 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.71□□□□□ -1.49
SHOX2O60902 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.71□□□□□ -1.49
SHOX2O60902 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SHOX2O60902 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SHOX2O60902 CXADRP1-201ENST00000398098 1095 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 Z82198.3-201ENST00000421145 199 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC5.71□□□□□ -1.5
SHOX2O60902 GTF3AP6-201ENST00000432585 986 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF619P1-201ENST00000446539 752 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.71□□□□□ -1.5
SHOX2O60902 RN7SL188P-201ENST00000469842 285 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 ATP5LP5-201ENST00000483050 299 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AC083795.1-201ENST00000491760 320 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 GM2AP2-201ENST00000491764 562 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.71□□□□□ -1.5
SHOX2O60902 IMPA1P1-201ENST00000510718 842 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 RN7SKP253-201ENST00000516424 309 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.71□□□□□ -1.5
SHOX2O60902 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.71□□□□□ -1.5
SHOX2O60902 AC021269.1-201ENST00000526860 705 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.71□□□□□ -1.5
SHOX2O60902 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.71□□□□□ -1.5
SHOX2O60902 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.71□□□□□ -1.5
SHOX2O60902 CXADRP3-202ENST00000617265 1100 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 AL672167.1-204ENST00000641875 3017 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHOX2O60902 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.71□□□□□ -1.5
SHOX2O60902 AC117409.1-201ENST00000470499 1310 ntBASIC5.71□□□□□ -1.5
SHOX2O60902 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.71□□□□□ -1.5
SHOX2O60902 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SHOX2O60902 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.7□□□□□ -1.5
SHOX2O60902 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms