Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HIGD1AP18-201ENST00000520730 278 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 RGS5-220ENST00000528689 566 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC095057.3-201ENST00000567102 1157 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC096708.2-201ENST00000577676 512 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 MIR3915-201ENST00000578518 97 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC019257.2-201ENST00000605539 497 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AP000254.1-201ENST00000609934 520 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL592148.2-201ENST00000612210 372 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC211486.4-201ENST00000621495 113 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL359757.1-201ENST00000623176 255 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC024023.1-201ENST00000624530 922 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC007494.3-201ENST00000624660 743 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC5.64□□□□□ -1.51
HOXA3O43365 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 OR5BE1P-202ENST00000641168 1176 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC002384.1-203ENST00000602761 3049 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 KARSP3-201ENST00000571212 1504 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 CDY19P-201ENST00000411668 1613 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 CDY18P-201ENST00000438294 1609 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 LRRC37A12P-201ENST00000454917 1801 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC112255.1-201ENST00000624070 2493 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXA3O43365 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXA3O43365 RN7SKP191-201ENST00000364713 306 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AL049697.3-201ENST00000406493 982 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 RN7SKP146-201ENST00000410242 334 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 RN7SKP91-201ENST00000410852 288 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 RNU2-18P-201ENST00000411224 162 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXA3O43365 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC018804.1-201ENST00000430381 618 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 RPSAP32-201ENST00000432681 526 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AL354941.1-201ENST00000438600 464 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 SDHCP3-201ENST00000445371 506 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 OR52E7P-201ENST00000452394 933 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC010878.1-201ENST00000456500 1047 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 NMNAT1P3-201ENST00000457517 888 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 CCNJP2-201ENST00000457810 1163 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 RN7SL390P-201ENST00000470634 284 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 UOX-201ENST00000471089 899 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC011979.1-201ENST00000472300 483 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 PPP1R2P6-201ENST00000478565 588 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC011352.1-201ENST00000512300 793 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 SETP21-201ENST00000514799 892 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC027801.3-201ENST00000515049 698 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC020937.1-201ENST00000519677 1013 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms