Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC091982.1-202ENST00000473923 343 ntBASIC6.63□□□□□ -1.35
RNF4P78317 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 AC011825.1-201ENST00000484967 388 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC025271.1-201ENST00000485045 429 ntBASIC6.63□□□□□ -1.35
RNF4P78317 RN7SL797P-201ENST00000486314 297 ntBASIC6.63□□□□□ -1.35
RNF4P78317 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 SCARNA18.2-201ENST00000516882 84 ntBASIC6.63□□□□□ -1.35
RNF4P78317 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.63□□□□□ -1.35
RNF4P78317 OR5G4P-201ENST00000525251 760 ntBASIC6.63□□□□□ -1.35
RNF4P78317 GLYATL1P4-201ENST00000529326 906 ntBASIC6.63□□□□□ -1.35
RNF4P78317 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 AC138393.1-206ENST00000540997 1886 ntBASIC6.63□□□□□ -1.35
RNF4P78317 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 AC092821.2-201ENST00000545710 2042 ntBASIC6.63□□□□□ -1.35
RNF4P78317 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 AL049870.4-201ENST00000555741 486 ntBASIC6.63□□□□□ -1.35
RNF4P78317 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 AC244034.2-201ENST00000562504 509 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC234778.2-201ENST00000566241 354 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC079171.1-201ENST00000568788 914 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC073429.2-201ENST00000569694 1444 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.63□□□□□ -1.35
RNF4P78317 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC6.63□□□□□ -1.35
RNF4P78317 AC009955.2-201ENST00000597288 542 ntBASIC6.63□□□□□ -1.35
RNF4P78317 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.63□□□□□ -1.35
RNF4P78317 U6atac.1-201ENST00000616025 117 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AL359195.2-201ENST00000623657 4412 ntBASIC6.63□□□□□ -1.35
RNF4P78317 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 RPSAP68-201ENST00000625020 438 ntBASIC6.63□□□□□ -1.35
RNF4P78317 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
RNF4P78317 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC6.63□□□□□ -1.35
RNF4P78317 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
RNF4P78317 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 BTBD7-208ENST00000555525 2328 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AC090771.1-201ENST00000585803 1618 ntBASIC6.62□□□□□ -1.35
RNF4P78317 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 MAPK10-323ENST00000641493 3207 ntBASIC6.62□□□□□ -1.35
RNF4P78317 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 AL356361.1-201ENST00000400943 1459 ntBASIC6.62□□□□□ -1.35
RNF4P78317 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 AL391994.1-201ENST00000254724 282 ntBASIC6.62□□□□□ -1.35
RNF4P78317 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 RN7SKP257-201ENST00000364525 309 ntBASIC6.62□□□□□ -1.35
RNF4P78317 RNU12-2P-201ENST00000364789 156 ntBASIC6.62□□□□□ -1.35
RNF4P78317 FAM204BP-201ENST00000369171 701 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 MIR431-201ENST00000385266 114 ntBASIC6.62□□□□□ -1.35
RNF4P78317 RNA5SP35-201ENST00000391257 129 ntBASIC6.62□□□□□ -1.35
RNF4P78317 TAF9BP1-201ENST00000396646 746 ntBASIC6.62□□□□□ -1.35
RNF4P78317 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 RAP1BP3-201ENST00000407180 549 ntBASIC6.62□□□□□ -1.35
RNF4P78317 PAICSP7-201ENST00000419829 962 ntBASIC6.62□□□□□ -1.35
RNF4P78317 PPIAP23-201ENST00000420099 497 ntBASIC6.62□□□□□ -1.35
RNF4P78317 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
RNF4P78317 OFD1P13Y-201ENST00000431179 1232 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 ATP5F1P1-201ENST00000433775 569 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 YWHAZP2-201ENST00000440317 728 ntBASIC6.62□□□□□ -1.35
RNF4P78317 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 MTCYBP1-201ENST00000454315 1119 ntBASIC6.62□□□□□ -1.35
RNF4P78317 VN1R6P-201ENST00000458417 907 ntBASIC6.62□□□□□ -1.35
RNF4P78317 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 SETP11-201ENST00000473027 690 ntBASIC6.62□□□□□ -1.35
RNF4P78317 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
RNF4P78317 AC037198.2-201ENST00000478845 733 ntBASIC6.62□□□□□ -1.35
RNF4P78317 RPL7AP30-201ENST00000482859 796 ntBASIC6.62□□□□□ -1.35
RNF4P78317 RPL22-208ENST00000497965 786 ntTSL 2 BASIC6.62□□□□□ -1.35
RNF4P78317 ARL4AP1-201ENST00000503220 705 ntBASIC6.62□□□□□ -1.35
RNF4P78317 PSMA2P2-201ENST00000504319 686 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC112198.1-201ENST00000505369 1220 ntBASIC6.62□□□□□ -1.35
RNF4P78317 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 LTV1P1-201ENST00000510683 1237 ntBASIC6.62□□□□□ -1.35
RNF4P78317 HMGB3P13-201ENST00000511263 607 ntBASIC6.62□□□□□ -1.35
RNF4P78317 RPS23-208ENST00000512493 443 ntTSL 3 BASIC6.62□□□□□ -1.35
RNF4P78317 AK6-204ENST00000512561 587 ntTSL 5 BASIC6.62□□□□□ -1.35
RNF4P78317 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms