Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL353807.4-201ENST00000604995 257 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 NQO2-209ENST00000606474 470 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA3P55318 WDR11-AS1-204ENST00000608667 522 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC4.25□□□□□ -1.73
FOXA3P55318 AL122125.1-201ENST00000616999 600 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC005355.2-201ENST00000625064 484 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 AC073488.3-201ENST00000631611 778 ntBASIC4.25□□□□□ -1.73
FOXA3P55318 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
FOXA3P55318 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXA3P55318 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA3P55318 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 GNL2P1-201ENST00000451274 2190 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 RNA5SP85-201ENST00000365378 119 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA3P55318 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC005042.1-201ENST00000393397 800 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AL139805.1-201ENST00000407837 289 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 HSD17B7P1-201ENST00000412419 1017 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AL360013.1-201ENST00000419031 858 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 THEM7P-201ENST00000419556 672 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC019205.1-201ENST00000421830 730 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 ELOBP4-201ENST00000423418 296 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC130360.1-201ENST00000425489 1117 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 HSPD1P12-201ENST00000429127 1069 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC073465.2-201ENST00000440938 498 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AL356133.1-201ENST00000444762 372 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 TAAR4P-201ENST00000454843 1039 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA3P55318 RN7SL39P-201ENST00000462264 297 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC008629.2-201ENST00000503783 483 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC130365.2-201ENST00000525882 1201 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC135983.3-201ENST00000528049 1226 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 OR8A2P-201ENST00000528631 952 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.24□□□□□ -1.73
FOXA3P55318 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 MRPS21P8-201ENST00000569196 235 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 GARSP1-201ENST00000570895 719 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 STARD6-202ENST00000577499 696 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 OR7E19P-202ENST00000589942 844 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AL589765.6-201ENST00000601909 549 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AL031429.2-201ENST00000602605 649 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC004839.1-201ENST00000610269 501 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 Six3os1_2.1-201ENST00000616963 217 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AMYH02020865.1-207ENST00000617096 458 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA3P55318 uc_338.7-201ENST00000621834 124 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC117503.3-201ENST00000623811 601 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 DLST-216ENST00000626051 252 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 ASB8-218ENST00000629941 278 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 AC027088.4-201ENST00000611559 1947 ntBASIC4.24□□□□□ -1.73
FOXA3P55318 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA3P55318 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA3P55318 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
FOXA3P55318 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA3P55318 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA3P55318 AC068870.1-201ENST00000563737 2455 ntBASIC4.23□□□□□ -1.73
FOXA3P55318 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 RBPJP7-201ENST00000442803 1447 ntBASIC4.23□□□□□ -1.73
FOXA3P55318 RBPJP5-201ENST00000449433 1447 ntBASIC4.23□□□□□ -1.73
FOXA3P55318 THAP12P5-201ENST00000405864 2275 ntBASIC4.23□□□□□ -1.73
FOXA3P55318 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA3P55318 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA3P55318 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms