Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC105420.1-201ENST00000504389 582 ntBASIC7.25□□□□□ -1.25
LIG3P49916 MTCO2P32-201ENST00000514865 403 ntBASIC7.25□□□□□ -1.25
LIG3P49916 SEPT10P1-201ENST00000517342 1162 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC073581.1-201ENST00000519036 575 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AP003084.1-201ENST00000524828 742 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC7.25□□□□□ -1.25
LIG3P49916 AC019209.3-201ENST00000536949 772 ntTSL 3 BASIC7.25□□□□□ -1.25
LIG3P49916 AC244502.2-201ENST00000543361 851 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC126177.6-201ENST00000550420 1009 ntBASIC7.25□□□□□ -1.25
LIG3P49916 FAM30C-201ENST00000561158 410 ntBASIC7.25□□□□□ -1.25
LIG3P49916 CYP2C60P-201ENST00000566088 139 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC7.25□□□□□ -1.25
LIG3P49916 RN7SL42P-201ENST00000579786 294 ntBASIC7.25□□□□□ -1.25
LIG3P49916 MIR3159-201ENST00000584572 74 ntBASIC7.25□□□□□ -1.25
LIG3P49916 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 AC095055.1-201ENST00000603472 1113 ntBASIC7.25□□□□□ -1.25
LIG3P49916 COX6CP16-201ENST00000603667 216 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AL031281.1-201ENST00000604049 488 ntBASIC7.25□□□□□ -1.25
LIG3P49916 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 AL352984.2-201ENST00000611153 546 ntBASIC7.25□□□□□ -1.25
LIG3P49916 AC010435.1-201ENST00000623353 1177 ntBASIC7.25□□□□□ -1.25
LIG3P49916 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 AP003108.4-201ENST00000623917 878 ntBASIC7.25□□□□□ -1.25
LIG3P49916 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 OR7E161P-202ENST00000641994 1033 ntBASIC7.25□□□□□ -1.25
LIG3P49916 TMCC1P1-201ENST00000518897 1980 ntBASIC7.25□□□□□ -1.25
LIG3P49916 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 AC105114.1-201ENST00000624795 1862 ntBASIC7.25□□□□□ -1.25
LIG3P49916 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.25□□□□□ -1.25
LIG3P49916 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
LIG3P49916 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC7.25□□□□□ -1.25
LIG3P49916 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
LIG3P49916 ECM1P2-201ENST00000503354 1577 ntBASIC7.25□□□□□ -1.25
LIG3P49916 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC7.24□□□□□ -1.25
LIG3P49916 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG3P49916 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
LIG3P49916 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC7.24□□□□□ -1.25
LIG3P49916 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
LIG3P49916 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 CCDC150P1-201ENST00000537123 2215 ntBASIC7.24□□□□□ -1.25
LIG3P49916 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG3P49916 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 ASNSP6-201ENST00000592770 1618 ntBASIC7.24□□□□□ -1.25
LIG3P49916 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
LIG3P49916 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG3P49916 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.24□□□□□ -1.25
LIG3P49916 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
LIG3P49916 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 RNU6-553P-201ENST00000364047 96 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RNA5SP355-201ENST00000365317 135 ntBASIC7.24□□□□□ -1.25
LIG3P49916 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC7.24□□□□□ -1.25
LIG3P49916 RNU6-157P-201ENST00000383957 107 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RNU6-549P-201ENST00000384433 107 ntBASIC7.24□□□□□ -1.25
LIG3P49916 MIR142-201ENST00000384835 87 ntBASIC7.24□□□□□ -1.25
LIG3P49916 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
LIG3P49916 SNORA40.2-201ENST00000390847 128 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RNA5SP35-201ENST00000391257 129 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RPL23AP59-201ENST00000399415 461 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG3P49916 AC010385.1-201ENST00000412374 256 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AL445213.1-201ENST00000412589 747 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AL157698.1-201ENST00000415190 1011 ntBASIC7.24□□□□□ -1.25
LIG3P49916 ZNF736P2Y-201ENST00000416040 1279 ntBASIC7.24□□□□□ -1.25
LIG3P49916 MTCO1P21-201ENST00000416634 589 ntBASIC7.24□□□□□ -1.25
LIG3P49916 TAF13P2-201ENST00000416876 286 ntBASIC7.24□□□□□ -1.25
LIG3P49916 GEMIN2P2-201ENST00000418195 715 ntBASIC7.24□□□□□ -1.25
LIG3P49916 OFD1P11Y-201ENST00000418213 1177 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AC134879.1-201ENST00000426062 394 ntBASIC7.24□□□□□ -1.25
LIG3P49916 OR52S1P-201ENST00000427016 937 ntBASIC7.24□□□□□ -1.25
LIG3P49916 IFNNP1-201ENST00000429219 553 ntBASIC7.24□□□□□ -1.25
LIG3P49916 YWHAZP7-201ENST00000436906 631 ntBASIC7.24□□□□□ -1.25
LIG3P49916 NDUFA12P1-201ENST00000455914 406 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RPL23P10-201ENST00000468780 412 ntBASIC7.24□□□□□ -1.25
LIG3P49916 RN7SL456P-201ENST00000469290 295 ntBASIC7.24□□□□□ -1.25
LIG3P49916 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
LIG3P49916 RPL7AP30-201ENST00000482859 796 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
LIG3P49916 AF305872.1-201ENST00000485217 471 ntBASIC7.24□□□□□ -1.25
LIG3P49916 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC7.24□□□□□ -1.25
LIG3P49916 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG3P49916 OR10J9P-201ENST00000511932 987 ntBASIC7.24□□□□□ -1.25
LIG3P49916 AC108120.2-201ENST00000512973 294 ntBASIC7.24□□□□□ -1.25
LIG3P49916 MTCYBP19-201ENST00000517463 1124 ntBASIC7.24□□□□□ -1.25
LIG3P49916 OR7E161P-201ENST00000533722 967 ntBASIC7.24□□□□□ -1.25
LIG3P49916 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC7.24□□□□□ -1.25
LIG3P49916 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms