Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.92
CUX1P39880 LRRC37A9P-201ENST00000603850 5376 ntBASIC9.32□□□□□ -0.92
CUX1P39880 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
CUX1P39880 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
CUX1P39880 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
CUX1P39880 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 SNORA17.1-201ENST00000362945 126 ntBASIC9.31□□□□□ -0.92
CUX1P39880 MIR551A-201ENST00000385042 96 ntBASIC9.31□□□□□ -0.92
CUX1P39880 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC9.31□□□□□ -0.92
CUX1P39880 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 AC007686.1-201ENST00000488511 463 ntBASIC9.31□□□□□ -0.92
CUX1P39880 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC9.31□□□□□ -0.92
CUX1P39880 RN7SKP99-201ENST00000517028 307 ntBASIC9.31□□□□□ -0.92
CUX1P39880 MIR4480-201ENST00000582492 71 ntBASIC9.31□□□□□ -0.92
CUX1P39880 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC9.31□□□□□ -0.92
CUX1P39880 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 ZNF733P-202ENST00000444809 1573 ntBASIC9.31□□□□□ -0.92
CUX1P39880 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
CUX1P39880 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC9.31□□□□□ -0.92
CUX1P39880 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 AP003170.5-201ENST00000397185 335 ntBASIC9.31□□□□□ -0.92
CUX1P39880 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC9.31□□□□□ -0.92
CUX1P39880 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC9.31□□□□□ -0.92
CUX1P39880 AL445687.2-201ENST00000458156 728 ntBASIC9.31□□□□□ -0.92
CUX1P39880 RPL37AP8-201ENST00000494116 276 ntBASIC9.31□□□□□ -0.92
CUX1P39880 CYCSP1-201ENST00000604815 315 ntBASIC9.31□□□□□ -0.92
CUX1P39880 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC9.31□□□□□ -0.92
CUX1P39880 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
CUX1P39880 DOCK11P1-201ENST00000553480 5932 ntBASIC9.31□□□□□ -0.92
CUX1P39880 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
CUX1P39880 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC9.3□□□□□ -0.92
CUX1P39880 AC022034.1-201ENST00000512867 2156 ntBASIC9.3□□□□□ -0.92
CUX1P39880 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 MAPK10-304ENST00000641341 3984 ntBASIC9.3□□□□□ -0.92
CUX1P39880 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 RN7SKP103-201ENST00000363848 320 ntBASIC9.3□□□□□ -0.92
CUX1P39880 RNU1-146P-201ENST00000364015 165 ntBASIC9.3□□□□□ -0.92
CUX1P39880 RN7SKP6-201ENST00000364795 319 ntBASIC9.3□□□□□ -0.92
CUX1P39880 RPSAP35-201ENST00000413753 818 ntBASIC9.3□□□□□ -0.92
CUX1P39880 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 RPS29P22-201ENST00000472363 168 ntBASIC9.3□□□□□ -0.92
CUX1P39880 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 AC024940.3-201ENST00000538551 316 ntBASIC9.3□□□□□ -0.92
CUX1P39880 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC9.3□□□□□ -0.92
CUX1P39880 DHFRP1-201ENST00000579682 559 ntBASIC9.3□□□□□ -0.92
CUX1P39880 MVP-219ENST00000629059 120 ntTSL 5 BASIC9.3□□□□□ -0.92
CUX1P39880 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CUX1P39880 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
CUX1P39880 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC9.29□□□□□ -0.92
CUX1P39880 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
CUX1P39880 MFSD4BP1-201ENST00000513330 1552 ntBASIC9.29□□□□□ -0.92
CUX1P39880 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CUX1P39880 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
CUX1P39880 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
CUX1P39880 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
CUX1P39880 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
CUX1P39880 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC9.29□□□□□ -0.92
CUX1P39880 RPS11P7-201ENST00000442125 465 ntBASIC9.29□□□□□ -0.92
CUX1P39880 RPS7P6-201ENST00000485777 579 ntBASIC9.29□□□□□ -0.92
CUX1P39880 MGST2-204ENST00000506797 634 ntTSL 2 BASIC9.29□□□□□ -0.92
CUX1P39880 GSTP1P1-201ENST00000548078 319 ntBASIC9.29□□□□□ -0.92
CUX1P39880 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC9.29□□□□□ -0.92
CUX1P39880 AC104785.1-201ENST00000603220 588 ntBASIC9.29□□□□□ -0.92
CUX1P39880 MIR7703-201ENST00000620784 77 ntBASIC9.29□□□□□ -0.92
CUX1P39880 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CUX1P39880 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC9.29□□□□□ -0.92
CUX1P39880 JPX-212ENST00000639185 9658 ntTSL 5 BASIC9.29□□□□□ -0.92
CUX1P39880 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC9.28□□□□□ -0.92
CUX1P39880 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC9.28□□□□□ -0.92
CUX1P39880 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC9.28□□□□□ -0.92
CUX1P39880 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms