Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC092111.2-201ENST00000611627 1414 ntBASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
HDDC3Q8N4P3 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC027088.4-201ENST00000611559 1947 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 OR2AT2P-201ENST00000413438 905 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 RPL34P3-201ENST00000421454 338 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 NFYAP1-201ENST00000431953 972 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AL627308.1-201ENST00000435693 821 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AL022237.1-201ENST00000446663 358 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 GEMIN2P1-201ENST00000454246 752 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC103563.5-201ENST00000455643 364 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 RPL5P16-201ENST00000471467 790 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 RFPL4AP3-201ENST00000515267 345 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC110056.1-201ENST00000525759 911 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AP000648.1-201ENST00000529682 397 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 OR6M2P-201ENST00000529831 871 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AL031601.1-201ENST00000605702 394 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC239803.2-201ENST00000610161 430 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AL021918.2-201ENST00000613415 194 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AP005431.1-201ENST00000618479 319 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AP001885.1-201ENST00000621658 558 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AP003400.2-201ENST00000624036 666 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 DNM1P47-203ENST00000571780 12667 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 SNX18P3-202ENST00000565670 1750 ntBASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HDDC3Q8N4P3 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 CCNT2P1-201ENST00000423082 1315 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC073365.1-203ENST00000641055 1992 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC027279.1-201ENST00000568885 4284 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 Z83820.1-201ENST00000456978 1499 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 RN7SKP160-201ENST00000363804 340 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AL355433.1-201ENST00000422804 300 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AL512637.1-201ENST00000439523 1231 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 RPL23AP60-201ENST00000450011 454 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC023245.1-201ENST00000468501 517 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 RPL17P2-201ENST00000491913 451 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 BLNK-209ENST00000495266 440 ntTSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC109481.1-201ENST00000509173 282 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC010547.6-201ENST00000571789 193 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 VN1R81P-201ENST00000602085 372 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 OR8G7P-201ENST00000616658 848 ntBASIC6.04□□□□□ -1.44
HDDC3Q8N4P3 MIR6719-201ENST00000622428 87 ntBASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms