Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC004656.1-201ENST00000568479 4951 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 RNU1-150P-201ENST00000362491 162 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 RNA5SP477-201ENST00000362639 119 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 RNA5SP431-201ENST00000410312 120 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.47□□□□□ -1.53
FOXA1P55317 RPS27AP6-201ENST00000427962 448 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.47□□□□□ -1.53
FOXA1P55317 TMEM183AP1-205ENST00000432739 290 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 PCBP2P1-201ENST00000437262 977 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.47□□□□□ -1.53
FOXA1P55317 AMYP1-201ENST00000440059 1023 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.47□□□□□ -1.53
FOXA1P55317 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 AC068228.1-201ENST00000461723 211 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 RN7SL570P-201ENST00000484405 292 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 RPL9P15-201ENST00000491096 532 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AC092349.1-201ENST00000504903 310 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 Y_RNA.667-201ENST00000516212 107 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 SCARNA6.1-201ENST00000516989 238 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AC021678.3-201ENST00000517893 476 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 HMGN2P36-201ENST00000529541 409 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.47□□□□□ -1.53
FOXA1P55317 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.47□□□□□ -1.53
FOXA1P55317 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.47□□□□□ -1.53
FOXA1P55317 LINC00556-201ENST00000569603 412 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 AL683826.1-201ENST00000624104 627 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 GTF2IP4-201ENST00000453092 2054 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 AC083899.1-201ENST00000454465 3819 ntBASIC5.47□□□□□ -1.53
FOXA1P55317 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.47□□□□□ -1.53
FOXA1P55317 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
FOXA1P55317 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
FOXA1P55317 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
FOXA1P55317 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
FOXA1P55317 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
FOXA1P55317 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 GAPDHP24-201ENST00000328713 983 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
FOXA1P55317 U3.28-201ENST00000391249 210 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 RPS6P23-201ENST00000413224 722 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.46□□□□□ -1.54
FOXA1P55317 NENFP1-201ENST00000419476 466 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 AC007679.3-201ENST00000434035 414 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 NDUFB4P8-201ENST00000435351 367 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 NANOGP9-201ENST00000439890 892 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.46□□□□□ -1.54
FOXA1P55317 EIF4E2P2-201ENST00000492033 736 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.46□□□□□ -1.54
FOXA1P55317 DUTP7-201ENST00000507982 486 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.46□□□□□ -1.54
FOXA1P55317 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 OR5H7P-201ENST00000514084 930 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.46□□□□□ -1.54
FOXA1P55317 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.46□□□□□ -1.54
FOXA1P55317 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
FOXA1P55317 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 COX6CP7-201ENST00000597056 208 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 CASC19-274ENST00000642018 970 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 AL034546.1-201ENST00000623740 3693 ntBASIC5.46□□□□□ -1.54
FOXA1P55317 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
FOXA1P55317 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
FOXA1P55317 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms