Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.82□□□□□ -1.32
BRCA1P38398 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
BRCA1P38398 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
BRCA1P38398 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.81□□□□□ -1.32
BRCA1P38398 AL031651.1-201ENST00000615357 1438 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SKP149-201ENST00000363008 344 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 AC019050.1-201ENST00000418508 492 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC008072.1-201ENST00000434254 824 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC092647.3-201ENST00000443044 633 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AL672138.1-201ENST00000450604 1015 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SL385P-201ENST00000468873 276 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 RPL7P16-201ENST00000479738 738 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SL205P-201ENST00000490174 284 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 AC134698.5-201ENST00000519444 336 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SL52P-201ENST00000584271 284 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC013731.1-201ENST00000604340 883 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SL722P-201ENST00000617780 284 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 RN7SL565P-201ENST00000618246 284 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC112694.2-201ENST00000623697 768 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
BRCA1P38398 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 RNU1-32P-201ENST00000363937 159 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 MIR640-201ENST00000385086 96 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 NPM1P40-201ENST00000412758 733 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 COX6B1P1-201ENST00000415962 213 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AC073648.4-201ENST00000442655 781 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.81□□□□□ -1.32
BRCA1P38398 NDUFA5P9-201ENST00000472609 340 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.81□□□□□ -1.32
BRCA1P38398 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.81□□□□□ -1.32
BRCA1P38398 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.81□□□□□ -1.32
BRCA1P38398 AC005084.1-201ENST00000605160 304 ntBASIC6.81□□□□□ -1.32
BRCA1P38398 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
BRCA1P38398 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
BRCA1P38398 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC6.81□□□□□ -1.32
BRCA1P38398 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.81□□□□□ -1.32
BRCA1P38398 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 USP9YP3-201ENST00000434481 1766 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
BRCA1P38398 MIR551A-201ENST00000385042 96 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
BRCA1P38398 AL133388.1-201ENST00000404509 287 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.8□□□□□ -1.32
BRCA1P38398 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.8□□□□□ -1.32
BRCA1P38398 AC002075.1-201ENST00000457396 676 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.8□□□□□ -1.32
BRCA1P38398 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.8□□□□□ -1.32
BRCA1P38398 HMGB1P40-201ENST00000525121 540 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 MIR5096-201ENST00000583713 70 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
BRCA1P38398 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
BRCA1P38398 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 AC011504.1-201ENST00000623331 4103 ntBASIC6.8□□□□□ -1.32
BRCA1P38398 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.8□□□□□ -1.32
BRCA1P38398 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
BRCA1P38398 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.8□□□□□ -1.32
BRCA1P38398 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.79□□□□□ -1.32
BRCA1P38398 PPP2R2DP1-201ENST00000420526 637 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 USP9YP9-201ENST00000429406 715 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.79□□□□□ -1.32
BRCA1P38398 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.79□□□□□ -1.32
BRCA1P38398 AL603882.1-201ENST00000463059 681 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
BRCA1P38398 DUTP1-201ENST00000493631 470 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 EIF3KP3-201ENST00000514461 639 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.79□□□□□ -1.32
BRCA1P38398 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.79□□□□□ -1.32
BRCA1P38398 AC020910.2-201ENST00000603635 610 ntBASIC6.79□□□□□ -1.32
BRCA1P38398 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms