Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.71□□□□□ -1.49
SHMT2P34897 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
SHMT2P34897 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.71□□□□□ -1.5
SHMT2P34897 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
SHMT2P34897 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 RNU1-150P-201ENST00000362491 162 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.71□□□□□ -1.5
SHMT2P34897 SLC20A1P1-201ENST00000413906 956 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 VN1R3-201ENST00000418822 919 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.71□□□□□ -1.5
SHMT2P34897 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.71□□□□□ -1.5
SHMT2P34897 AL603882.1-201ENST00000463059 681 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AC084754.1-201ENST00000463466 464 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AC090568.1-201ENST00000509499 856 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 TOMM22P4-201ENST00000511318 336 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.71□□□□□ -1.5
SHMT2P34897 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.71□□□□□ -1.5
SHMT2P34897 AP004609.2-201ENST00000532177 190 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.71□□□□□ -1.5
SHMT2P34897 AC006530.1-201ENST00000555980 571 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.71□□□□□ -1.5
SHMT2P34897 FAM27E4-201ENST00000605259 342 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AP001962.1-201ENST00000624114 559 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.71□□□□□ -1.5
SHMT2P34897 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
SHMT2P34897 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
SHMT2P34897 MTND5P12-201ENST00000502851 1449 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.71□□□□□ -1.5
SHMT2P34897 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 AC130304.1-201ENST00000622942 2385 ntBASIC5.71□□□□□ -1.5
SHMT2P34897 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.71□□□□□ -1.5
SHMT2P34897 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SHMT2P34897 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SHMT2P34897 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 AK4P4-201ENST00000419465 646 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 RPS3P2-201ENST00000421346 701 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 DEFA9P-201ENST00000433042 285 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 RPL12P11-201ENST00000439970 501 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AC023141.8-201ENST00000442554 208 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC144530.1-201ENST00000452862 555 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AC011476.1-201ENST00000466725 307 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC007346.2-201ENST00000564816 892 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 MIR4310-201ENST00000582950 57 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AL049840.6-201ENST00000604583 345 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AL034374.2-201ENST00000605281 548 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AC015982.1-201ENST00000608113 465 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AL355974.3-201ENST00000617383 467 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHMT2P34897 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.7□□□□□ -1.5
SHMT2P34897 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.7□□□□□ -1.5
SHMT2P34897 GTF2IP4-201ENST00000453092 2054 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 RPS2P45-201ENST00000469997 2057 ntBASIC5.7□□□□□ -1.5
SHMT2P34897 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SHMT2P34897 AC004076.2-201ENST00000620532 3323 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms