Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC090617.9-201ENST00000623751 147 ntBASIC7.72□□□□□ -1.17
LIG1P18858 SNORA16A-202ENST00000628458 135 ntBASIC7.72□□□□□ -1.17
LIG1P18858 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC7.72□□□□□ -1.17
LIG1P18858 AC090582.1-201ENST00000636321 199 ntBASIC7.72□□□□□ -1.17
LIG1P18858 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC7.72□□□□□ -1.17
LIG1P18858 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIG1P18858 AC140479.2-201ENST00000421567 3130 ntBASIC7.72□□□□□ -1.17
LIG1P18858 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.72□□□□□ -1.17
LIG1P18858 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIG1P18858 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIG1P18858 AL512353.3-201ENST00000417517 1326 ntBASIC7.72□□□□□ -1.17
LIG1P18858 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC7.72□□□□□ -1.17
LIG1P18858 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
LIG1P18858 ERG-202ENST00000398897 4651 ntTSL 5 BASIC7.72□□□□□ -1.17
LIG1P18858 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
LIG1P18858 MS4A6A-213ENST00000530839 1383 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
LIG1P18858 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.71□□□□□ -1.17
LIG1P18858 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIG1P18858 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIG1P18858 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.17
LIG1P18858 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 CNOT6LP1-201ENST00000559681 1462 ntBASIC7.71□□□□□ -1.18
LIG1P18858 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 RNU6-1242P-201ENST00000391052 103 ntBASIC7.71□□□□□ -1.18
LIG1P18858 RNU1-56P-201ENST00000391303 164 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 EEF1GP6-201ENST00000402309 905 ntBASIC7.71□□□□□ -1.18
LIG1P18858 LYPLA1P3-201ENST00000402650 695 ntBASIC7.71□□□□□ -1.18
LIG1P18858 Z68694.1-201ENST00000413929 841 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC7.71□□□□□ -1.18
LIG1P18858 RPL12P43-201ENST00000420608 499 ntBASIC7.71□□□□□ -1.18
LIG1P18858 ARAFP1-201ENST00000422172 605 ntBASIC7.71□□□□□ -1.18
LIG1P18858 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AL445567.1-201ENST00000439121 144 ntBASIC7.71□□□□□ -1.18
LIG1P18858 RPL23AP23-201ENST00000452590 471 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AL139156.3-201ENST00000454802 394 ntBASIC7.71□□□□□ -1.18
LIG1P18858 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 AC074386.1-206ENST00000487102 761 ntBASIC7.71□□□□□ -1.18
LIG1P18858 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 AC109927.2-201ENST00000506416 303 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC074087.1-201ENST00000512059 724 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC010442.1-201ENST00000515583 816 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC130366.1-201ENST00000526505 1192 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC7.71□□□□□ -1.18
LIG1P18858 PHBP2-201ENST00000532859 806 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AC089984.3-201ENST00000552838 363 ntBASIC7.71□□□□□ -1.18
LIG1P18858 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 HMGN2P47-201ENST00000559378 272 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AC004987.4-201ENST00000603383 338 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AL591222.2-201ENST00000604443 754 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC010245.2-201ENST00000606908 1167 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC092354.2-201ENST00000607786 514 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC7.71□□□□□ -1.18
LIG1P18858 AC010333.3-201ENST00000615100 402 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AC073534.2-201ENST00000620377 381 ntBASIC7.71□□□□□ -1.18
LIG1P18858 Six3os1_1.1-201ENST00000620900 87 ntBASIC7.71□□□□□ -1.18
LIG1P18858 AP000577.1-201ENST00000624366 878 ntBASIC7.71□□□□□ -1.18
LIG1P18858 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 AC103706.2-201ENST00000638080 240 ntBASIC7.71□□□□□ -1.18
LIG1P18858 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
LIG1P18858 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 ZNF736P9Y-201ENST00000439586 1345 ntBASIC7.71□□□□□ -1.18
LIG1P18858 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
LIG1P18858 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.18
LIG1P18858 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
LIG1P18858 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC7.7□□□□□ -1.18
LIG1P18858 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.7□□□□□ -1.18
LIG1P18858 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC7.7□□□□□ -1.18
LIG1P18858 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIG1P18858 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIG1P18858 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
LIG1P18858 Y_RNA.194-201ENST00000363985 102 ntBASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms