Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 RNU105B-201ENST00000364478 208 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 RNU11-6P-201ENST00000391127 133 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 RPS3AP2-201ENST00000407190 754 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 EEF1B2P8-201ENST00000414101 671 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 AC097721.1-201ENST00000427150 1253 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 MGAT2P2-201ENST00000427194 797 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AL365220.1-201ENST00000432923 399 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXD4P09016 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXD4P09016 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXD4P09016 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXD4P09016 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 RPS4XP14-201ENST00000493072 781 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXD4P09016 RNA5SP438-201ENST00000516561 112 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AC022616.2-201ENST00000523185 300 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 OR56A7P-201ENST00000524865 941 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 OR6M2P-201ENST00000529831 871 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 AC090022.1-201ENST00000546569 311 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AP005119.1-201ENST00000580956 292 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.47□□□□□ -1.53
HOXD4P09016 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.47□□□□□ -1.53
HOXD4P09016 AC096861.1-201ENST00000616652 240 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 AC096708.4-201ENST00000620563 552 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.47□□□□□ -1.53
HOXD4P09016 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
HOXD4P09016 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 PARP4P2-201ENST00000446672 3326 ntBASIC5.47□□□□□ -1.53
HOXD4P09016 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 RNF19BPY-201ENST00000458209 1550 ntBASIC5.46□□□□□ -1.53
HOXD4P09016 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
HOXD4P09016 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.46□□□□□ -1.53
HOXD4P09016 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.53
HOXD4P09016 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.46□□□□□ -1.53
HOXD4P09016 TCP11X1-202ENST00000622971 1372 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 OR52B3P-201ENST00000314715 928 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXD4P09016 RNA5SP453-201ENST00000362503 119 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 HMGA1P8-201ENST00000414130 321 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 BRWD1P3-201ENST00000428816 390 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 RPL12P18-201ENST00000437175 325 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 RPL23AP60-201ENST00000450011 454 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 RPL7L1P4-201ENST00000513004 707 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.46□□□□□ -1.54
HOXD4P09016 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.46□□□□□ -1.54
HOXD4P09016 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXD4P09016 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXD4P09016 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.46□□□□□ -1.54
HOXD4P09016 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXD4P09016 AC090286.3-201ENST00000573133 187 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.46□□□□□ -1.54
HOXD4P09016 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 AC020763.5-201ENST00000623298 430 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXD4P09016 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 AL137141.1-201ENST00000624622 4836 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HOXD4P09016 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXD4P09016 KYNUP3-201ENST00000574386 1341 ntBASIC5.46□□□□□ -1.54
HOXD4P09016 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXD4P09016 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms