Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6□□□□□ -1.45
COL28A1Q2UY09 AC012557.1-201ENST00000607115 611 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC008833.1-201ENST00000611633 691 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AL512652.1-201ENST00000619006 500 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC026367.3-201ENST00000619032 590 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL28A1Q2UY09 AC006511.3-201ENST00000624929 1783 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 C4BPAP1-201ENST00000415474 1893 ntBASIC6□□□□□ -1.45
COL28A1Q2UY09 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
COL28A1Q2UY09 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
COL28A1Q2UY09 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AP002370.1-201ENST00000528055 1602 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 GAPDHP24-201ENST00000328713 983 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 USP9YP19-201ENST00000412165 485 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 GABARAPL3-201ENST00000412799 354 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AL139415.1-201ENST00000424862 352 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AL590623.1-201ENST00000427864 105 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 KCTD9P4-201ENST00000526766 1166 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 GTF2IP11-201ENST00000526931 420 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 NPM1P5-201ENST00000557228 838 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AL023583.1-201ENST00000607518 1143 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 AP000432.2-201ENST00000624164 2048 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 TNPO1P2-201ENST00000426249 2665 ntBASIC5.99□□□□□ -1.45
COL28A1Q2UY09 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL28A1Q2UY09 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 Z95114.1-201ENST00000624264 14574 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 RPL5P20-201ENST00000403848 896 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 RN7SKP161-201ENST00000411110 305 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 OTX2P1-201ENST00000450956 354 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 RPL23AP64-201ENST00000469465 435 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC022415.1-202ENST00000486612 523 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 HNRNPCP1-201ENST00000556181 766 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.98□□□□□ -1.45
COL28A1Q2UY09 MIR1269B-201ENST00000580405 75 ntBASIC5.98□□□□□ -1.45
COL28A1Q2UY09 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 220.1 ms