Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.49□□□□□ -1.53
FOXA1P55317 NDUFS5P5-201ENST00000437256 321 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 TIMM8BP2-201ENST00000445940 251 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 AL451063.1-201ENST00000450164 1133 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC009963.3-201ENST00000458090 486 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 SNORD125-201ENST00000459538 96 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 RPSAP37-201ENST00000470913 821 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 AC009120.1-201ENST00000493458 473 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 RPSAP51-201ENST00000497462 645 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 RNA5SP438-201ENST00000516561 112 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC007956.1-201ENST00000555623 542 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 CYCSP38-201ENST00000559840 322 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 MIR3154-201ENST00000577829 84 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC008507.3-201ENST00000585753 472 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.49□□□□□ -1.53
FOXA1P55317 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.49□□□□□ -1.53
FOXA1P55317 PCA3_2.1-201ENST00000612507 409 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 CASC19-238ENST00000641523 1558 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
FOXA1P55317 NLRP3P1-201ENST00000622303 1785 ntBASIC5.49□□□□□ -1.53
FOXA1P55317 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
FOXA1P55317 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.49□□□□□ -1.53
FOXA1P55317 LYARP1-201ENST00000436977 1501 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC007842.1-201ENST00000597336 2039 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC013268.3-201ENST00000262716 2324 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC016745.2-201ENST00000608834 3443 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 OR4F13P-202ENST00000560066 2054 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AL592429.1-201ENST00000403909 1473 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 COX6B1P3-201ENST00000312310 260 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 SNORA70.6-201ENST00000383934 134 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
FOXA1P55317 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
FOXA1P55317 AL133482.1-201ENST00000415988 498 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC126120.1-201ENST00000431082 470 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 LINC02210-201ENST00000444561 288 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 EEF1B2P3-201ENST00000447718 678 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 YRDCP3-201ENST00000456507 480 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AL122020.1-201ENST00000472287 459 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.48□□□□□ -1.53
FOXA1P55317 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 AC074255.1-201ENST00000511259 501 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.48□□□□□ -1.53
FOXA1P55317 AP003396.4-201ENST00000527574 265 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC084121.1-201ENST00000533882 835 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC122688.1-201ENST00000541494 223 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.48□□□□□ -1.53
FOXA1P55317 AC079905.1-201ENST00000549280 475 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AL845552.1-201ENST00000556820 323 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.48□□□□□ -1.53
FOXA1P55317 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.48□□□□□ -1.53
FOXA1P55317 RPL12P48-201ENST00000605620 304 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 PWAR1-201ENST00000624188 2414 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.48□□□□□ -1.53
FOXA1P55317 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
FOXA1P55317 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
FOXA1P55317 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.48□□□□□ -1.53
FOXA1P55317 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.48□□□□□ -1.53
FOXA1P55317 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.47□□□□□ -1.53
FOXA1P55317 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
FOXA1P55317 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
FOXA1P55317 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 254.4 ms