Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RN7SL182P-201ENST00000496499 300 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC015864.1-201ENST00000496512 544 ntBASIC6.19□□□□□ -1.42
MSX2P35548 OR5BM1P-201ENST00000512021 366 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 SETP21-201ENST00000514799 892 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 RN7SKP67-201ENST00000515905 235 ntBASIC6.19□□□□□ -1.42
MSX2P35548 RNA5SP278-201ENST00000517055 102 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 PPIAP6-201ENST00000557078 499 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 AC026458.1-201ENST00000564330 438 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC007346.2-201ENST00000564816 892 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC6.19□□□□□ -1.42
MSX2P35548 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC6.19□□□□□ -1.42
MSX2P35548 AC025283.1-201ENST00000572039 734 ntBASIC6.19□□□□□ -1.42
MSX2P35548 MIR4685-201ENST00000578185 69 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 RN7SL657P-201ENST00000582431 293 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 AC092032.1-201ENST00000603090 165 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC121247.2-201ENST00000604776 136 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC073387.2-201ENST00000604797 784 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC024589.2-201ENST00000605642 1294 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC005277.2-201ENST00000617898 390 ntBASIC6.19□□□□□ -1.42
MSX2P35548 PART1_3.1-201ENST00000619680 131 ntBASIC6.19□□□□□ -1.42
MSX2P35548 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 AP002782.1-201ENST00000623107 614 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC087893.2-201ENST00000623272 255 ntBASIC6.19□□□□□ -1.42
MSX2P35548 AC104985.3-201ENST00000623479 597 ntBASIC6.19□□□□□ -1.42
MSX2P35548 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
MSX2P35548 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 AC105235.1-201ENST00000623208 1816 ntBASIC6.19□□□□□ -1.42
MSX2P35548 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.19□□□□□ -1.42
MSX2P35548 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
MSX2P35548 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
MSX2P35548 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.19□□□□□ -1.42
MSX2P35548 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.19□□□□□ -1.42
MSX2P35548 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 RNU4-24P-201ENST00000364565 139 ntBASIC6.18□□□□□ -1.42
MSX2P35548 RN7SKP1-201ENST00000365525 307 ntBASIC6.18□□□□□ -1.42
MSX2P35548 BMS1P3-201ENST00000372011 932 ntBASIC6.18□□□□□ -1.42
MSX2P35548 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 RNA5SP53-201ENST00000391299 120 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AP002784.2-201ENST00000397300 549 ntBASIC6.18□□□□□ -1.42
MSX2P35548 RN7SKP161-201ENST00000411110 305 ntBASIC6.18□□□□□ -1.42
MSX2P35548 RN7SKP296-201ENST00000411185 341 ntBASIC6.18□□□□□ -1.42
MSX2P35548 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 AC098592.2-201ENST00000413158 265 ntBASIC6.18□□□□□ -1.42
MSX2P35548 VN1R31P-201ENST00000417498 730 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AL390023.1-201ENST00000428836 262 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 AL365396.1-201ENST00000430854 671 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 VDAC2P3-201ENST00000430995 828 ntBASIC6.18□□□□□ -1.42
MSX2P35548 PRELID3BP10-201ENST00000431957 584 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 CHCHD4P5-201ENST00000436684 427 ntBASIC6.18□□□□□ -1.42
MSX2P35548 RPL29P7-201ENST00000440227 457 ntBASIC6.18□□□□□ -1.42
MSX2P35548 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.18□□□□□ -1.42
MSX2P35548 AC236972.4-201ENST00000458091 963 ntBASIC6.18□□□□□ -1.42
MSX2P35548 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 RN7SL849P-201ENST00000485236 295 ntBASIC6.18□□□□□ -1.42
MSX2P35548 RPS3AP22-201ENST00000488297 769 ntBASIC6.18□□□□□ -1.42
MSX2P35548 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 OR5D2P-201ENST00000524390 911 ntBASIC6.18□□□□□ -1.42
MSX2P35548 SETP17-201ENST00000534163 817 ntBASIC6.18□□□□□ -1.42
MSX2P35548 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 AC027807.1-201ENST00000559921 996 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC091304.4-201ENST00000565703 620 ntBASIC6.18□□□□□ -1.42
MSX2P35548 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 AC091304.5-201ENST00000568969 158 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AL583856.2-201ENST00000606298 543 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 AL360219.1-201ENST00000610230 366 ntBASIC6.18□□□□□ -1.42
MSX2P35548 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms