Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL3A1P02461 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL3A1P02461 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC7.44□□□□□ -1.22
COL3A1P02461 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
COL3A1P02461 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 AC018809.2-201ENST00000602436 3823 ntBASIC7.44□□□□□ -1.22
COL3A1P02461 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
COL3A1P02461 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.44□□□□□ -1.22
COL3A1P02461 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 AC096921.1-201ENST00000411661 375 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 NPM1P4-201ENST00000414095 812 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC7.43□□□□□ -1.22
COL3A1P02461 AL596266.1-201ENST00000448132 400 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 LDHBP2-201ENST00000456969 1005 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 EIF1P7-201ENST00000487533 337 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC7.43□□□□□ -1.22
COL3A1P02461 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
COL3A1P02461 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.43□□□□□ -1.22
COL3A1P02461 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.43□□□□□ -1.22
COL3A1P02461 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 KYNUP3-201ENST00000574386 1341 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC7.43□□□□□ -1.22
COL3A1P02461 LRRC37A9P-201ENST00000603850 5376 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
COL3A1P02461 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
COL3A1P02461 RNGTTP1-201ENST00000420965 728 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 AL450996.1-201ENST00000445574 1202 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 AC108693.1-201ENST00000496068 432 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.43□□□□□ -1.22
COL3A1P02461 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.43□□□□□ -1.22
COL3A1P02461 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.43□□□□□ -1.22
COL3A1P02461 AC239803.2-201ENST00000610161 430 ntBASIC7.43□□□□□ -1.22
COL3A1P02461 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 MAPK10-371ENST00000641952 5209 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 AL158152.1-201ENST00000602652 1435 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
COL3A1P02461 RNA5SP335-201ENST00000363817 110 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.42□□□□□ -1.22
COL3A1P02461 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.42□□□□□ -1.22
COL3A1P02461 SUMO2P1-206ENST00000445436 284 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.42□□□□□ -1.22
COL3A1P02461 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC7.42□□□□□ -1.22
COL3A1P02461 RN7SL727P-201ENST00000482164 296 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.42□□□□□ -1.22
COL3A1P02461 OR4A6P-201ENST00000534364 970 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC7.42□□□□□ -1.22
COL3A1P02461 AC126177.5-201ENST00000549599 178 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 AC051619.2-201ENST00000559063 397 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 AC007225.2-201ENST00000562529 256 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 RBM22P1-201ENST00000578589 1214 ntBASIC7.42□□□□□ -1.22
COL3A1P02461 AP001357.1-201ENST00000586304 1053 ntBASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms